View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_22 (Length: 340)
Name: NF9620_low_22
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 43021294 - 43020970
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
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| T |
43021294 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
43021195 |
T |
|
| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021194 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
43021095 |
T |
|
| Q |
201 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021094 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatg |
43020995 |
T |
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| Q |
301 |
tgagtagtgttggagatgtttcttc |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
43020994 |
tgagtagtgttggagatgtttcttc |
43020970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 35059992 - 35059666
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35059992 |
aatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatatcattaactacttac |
35059895 |
T |
|
| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgt-gaactatgcag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
35059894 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcag |
35059795 |
T |
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| Q |
200 |
tgcttaagactcatccgagt---ttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtaga |
296 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35059794 |
tgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaagatcgagaatttggtaga |
35059695 |
T |
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| Q |
297 |
gatgtgagtagtgttggagatgtttcttc |
325 |
Q |
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|||||||| | |||||||||||||||||| |
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| T |
35059694 |
gatgtgagcaatgttggagatgtttcttc |
35059666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 42810459 - 42810148
Alignment:
| Q |
9 |
ttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttacctattgaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| || |||| |
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| T |
42810459 |
ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacacaa-gacatttttccatgtcattaactacttacatagtgaa |
42810361 |
T |
|
| Q |
109 |
tatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagtgcttaaga |
208 |
Q |
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| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||| |
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| T |
42810360 |
tttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcatttgaactatggagtgcttaaga |
42810262 |
T |
|
| Q |
209 |
ctcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatgtgagtagt |
308 |
Q |
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||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42810261 |
gtcatcgaagttt---gtcttattgcttttaatgagtttaattctttcatggaacagggacttatccaaagatcgagaatttggtagagatgtgagtagt |
42810165 |
T |
|
| Q |
309 |
gttggagatgtttcttc |
325 |
Q |
| |
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||||||||||||||||| |
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| T |
42810164 |
gttggagatgtttcttc |
42810148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 41567447 - 41567499
Alignment:
| Q |
273 |
tccaaagatcgagaatttggtagagatgtgagtagtgttggagatgtttcttc |
325 |
Q |
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||||| |||||||| |||||||| || ||||| |||||||| ||||||||||| |
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| T |
41567447 |
tccaaggatcgagattttggtagggaagtgagcagtgttggggatgtttcttc |
41567499 |
T |
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