View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_25 (Length: 294)
Name: NF9620_low_25
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_25 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 11444948 - 11445213
Alignment:
| Q |
18 |
gttaaaagtgtcagcggcagttaactaccaatgctgcagatataagagaatggacagtaattttcataacataatttggtgaacgtaccttgagtaaaac |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11444948 |
gttaaaagtgtcagcggtagttaactaccaatgctgcagatataagagaatggacagtaattttcataacataatttggtgaacgtaccttgagtaaaac |
11445047 |
T |
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| Q |
118 |
agcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgtggttgatcaaatact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11445048 |
agcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgtggttgatcaaatact |
11445147 |
T |
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| Q |
218 |
gtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
283 |
Q |
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| T |
11445148 |
gtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
11445213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 91 - 283
Target Start/End: Complemental strand, 11507838 - 11507646
Alignment:
| Q |
91 |
atttggtgaacgtaccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaatta |
190 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11507838 |
atttggtgaacataccttaagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattg |
11507739 |
T |
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| Q |
191 |
gccacaacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
283 |
Q |
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| T |
11507738 |
gccacaacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
11507646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 91 - 283
Target Start/End: Complemental strand, 11548069 - 11547877
Alignment:
| Q |
91 |
atttggtgaacgtaccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaatta |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
11548069 |
atttggtgaacgtaccttgagtaaaacagcatctgcaggagggatagatttgaacatatctccaccaacaaatttcaaattttcatctccagacaagtta |
11547970 |
T |
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| Q |
191 |
gccacaacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
283 |
Q |
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| T |
11547969 |
gccacaacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
11547877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 11468023 - 11468177
Alignment:
| Q |
103 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgt |
202 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
11468023 |
taccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacctgt |
11468122 |
T |
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| Q |
203 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttg |
257 |
Q |
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| T |
11468123 |
ggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttg |
11468177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 11523438 - 11523284
Alignment:
| Q |
103 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgt |
202 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
11523438 |
taccttgagtaaaacagcatctgcaggagggattgatttgaacatatctccaccaacaaagttcaaattttgagttccagataagttagccacaacctgt |
11523339 |
T |
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| Q |
203 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttg |
257 |
Q |
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| T |
11523338 |
ggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttg |
11523284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 283
Target Start/End: Complemental strand, 34776420 - 34776240
Alignment:
| Q |
103 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgt |
202 |
Q |
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|||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| ||| ||| | ||||||||| |
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| T |
34776420 |
taccttaagtaaaacagcatcagcagaagggatagatttgaacatatctccaccaacaaagttcaaattttcatttccagttaagttaccaacaacctgt |
34776321 |
T |
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| Q |
203 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
283 |
Q |
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||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| | ||| || | |||||||||||| |
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| T |
34776320 |
ggttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaaca |
34776240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 11548176 - 11548101
Alignment:
| Q |
18 |
gttaaaagtgtcagcggcagttaactaccaatgctgcagatataagagaatggacagtaattttcataacataatt |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11548176 |
gttaaaagtgtcagcggcagttaactaccaatgctgcagatataagagaatggacagtaattttcataacataatt |
11548101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 34784632 - 34784475
Alignment:
| Q |
103 |
taccttgagtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgt |
202 |
Q |
| |
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||||||||||||||| || || |||| ||||||||| | ||||||||| |||| |||||| |||||||||| || ||||| ||| ||| | ||||||||| |
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| T |
34784632 |
taccttgagtaaaacggcgtcagcaggagggatagacttgaacatatcaccactaacaaagttcaaattttcatttccagttaagttaccaacaacctgt |
34784533 |
T |
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| Q |
203 |
ggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtga |
260 |
Q |
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||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| |
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| T |
34784532 |
ggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtga |
34784475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 2476 - 2303
Alignment:
| Q |
110 |
agtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttgatctccagataaattagccacaacctgtggttgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
2476 |
agtaaaacagcatctgcagaagggatagattcgaacatatctccaccaacaaatttcaaattttcatctccagataaattggccacaacctgtggttgat |
2377 |
T |
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| Q |
210 |
caaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2376 |
caaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaaca |
2303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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