View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_27 (Length: 289)
Name: NF9620_low_27
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_27 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 45735305 - 45735413
Alignment:
| Q |
17 |
cattaaaaccattatatcatgcaattcatgtttcaaatcaaaagagggacataaagagagagtggtacctggccagaataatttcttgaattaacatcag |
116 |
Q |
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| T |
45735305 |
cattaaaaccattatatcatgcaattcatgtttcaaatcaaaagagggacataaagagagagtggtacctggccagaataatttcttgaattaacatcag |
45735404 |
T |
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| Q |
117 |
ctccattct |
125 |
Q |
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| T |
45735405 |
ctccattct |
45735413 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 45735495 - 45735571
Alignment:
| Q |
207 |
gggttaatctgaattatgaaaacctcgttatgaccctttgcagatgcaaaatgaagaggagaattaagaccaccaaa |
283 |
Q |
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| T |
45735495 |
gggttaatctgaattatgaaaacctcgttatgaccctttgcagatgcaaaatgaagaggagaattaagaccaccaaa |
45735571 |
T |
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Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 162989 - 163047
Alignment:
| Q |
225 |
aaaacctcgttatgaccctttgcagatgcaaaatgaagaggagaattaagaccaccaaa |
283 |
Q |
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| T |
162989 |
aaaacctcgttatgacccttagaagctgcaaaatgaagaggtgaattaagaccaccaaa |
163047 |
T |
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