View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_34 (Length: 263)
Name: NF9620_low_34
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 30745760 - 30745535
Alignment:
| Q |
15 |
cactaatgtgaggtgaattgcaatttcaaagaaaaatgagagagtatgaatgaaaattatgtaaattgttttgatagaagattgtagagatagaatatgt |
114 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30745760 |
cactaatgtgaggtgaattgcaacttcgaagaaaaatgagagagtatgaatgaaaattatgtaaattgttttgatagaagattgtagagatagaatatgt |
30745661 |
T |
|
| Q |
115 |
ataatgtagcaaccgtatatatatagaggtggttatgctaactaagagttaatctctagctgactaactaatgaaaaatagttattaactttcaactaac |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
30745660 |
ataatgtagcaaccgtata--tatagaggtggttatgctaactaagagttaatctctagctgactaactaatgacaactagttattaactttcaactaac |
30745563 |
T |
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| Q |
215 |
taatctctatcaacttgttataatctat |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30745562 |
taatctctatcaacttgttataatctat |
30745535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 30767211 - 30766986
Alignment:
| Q |
15 |
cactaatgtgaggtgaattgcaatttcaaagaaaaatgagagagtatgaatgaaaattatgtaaattgttttgatagaagattgtagagatagaatatgt |
114 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767211 |
cactaatgtgaggtgaattgcaacttcgaagaaaaatgagagagtatgaatgaaaattatgtaaattgttttgatagaagattgtagagatagaatatgt |
30767112 |
T |
|
| Q |
115 |
ataatgtagcaaccgtatatatatagaggtggttatgctaactaagagttaatctctagctgactaactaatgaaaaatagttattaactttcaactaac |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
30767111 |
ataatgtagcaaccgtata--tatagaggtggttatgctaactaagagttaatctctagctgactaactaatgacaactagttattaactttcaactaac |
30767014 |
T |
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| Q |
215 |
taatctctatcaacttgttataatctat |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30767013 |
taatctctatcaacttgttataatctat |
30766986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 30477461 - 30477576
Alignment:
| Q |
74 |
tgtaaattgttttga-tagaagattgtagagatagaatatgtataatgtagcaaccgtatatatatagaggtggttatgctaacta----agagttaatc |
168 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||| |||| | |||| |||||||||| || |||||||||||| |||||||||| |
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| T |
30477461 |
tgtaaattgtattgaatagaagattgtagagatactatatgtacaatgcaataacc----atatatagagatgattatgctaactatgatagagttaatc |
30477556 |
T |
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| Q |
169 |
tctagctgactaactaatga |
188 |
Q |
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|||| ||||||||||||||| |
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| T |
30477557 |
tctaactgactaactaatga |
30477576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 23510544 - 23510494
Alignment:
| Q |
17 |
ctaatgtgaggtgaattgcaatttcaaagaaaaatgagagagtatgaatga |
67 |
Q |
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| T |
23510544 |
ctaatgtgaggtgaattgcaacttcgaaggagaatgagagagtatgaatga |
23510494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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