View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_35 (Length: 256)
Name: NF9620_low_35
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22513586 - 22513350
Alignment:
| Q |
1 |
tgaagtagaaacacgcagaagtgataagtcaaagtttttacgtgtgaatgaaaaagagaacaatggttgcggtataattacacaatgtaattctgtcaag |
100 |
Q |
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| T |
22513586 |
tgaagtagaaacacgcagaagtgatgcgtcaaagtttttacatgtgaatgaaaaagagaacaatggttgcggtataattacacaatgtaattctgtcaag |
22513487 |
T |
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| Q |
101 |
gaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacaagtaagtgaagatc |
200 |
Q |
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| T |
22513486 |
gaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaataaagaatgccagaagcatactgccaatactttacaagtaactgaagatc |
22513387 |
T |
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| Q |
201 |
aaaagatagaaaatctatcgacacaacctccactccc |
237 |
Q |
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| T |
22513386 |
aaaagatagaaaatctatcgacacaacctccactccc |
22513350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 42313703 - 42313865
Alignment:
| Q |
53 |
aaagagaacaatggttgcggtataattacacaatgtaattctgtcaaggaagattgggatatggatgtgaacaagtctttagttttaccatctaaaaata |
152 |
Q |
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| T |
42313703 |
aaagagaaaaatggttgcggtataactaaacggtgtgattctgtcaaggaagactgggatatggatgtggacaagtctttagttttaccatctaaaaata |
42313802 |
T |
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| Q |
153 |
aagaatgccagaagcatactgccaatactttacaagtaagtgaagatcaaaagatagaaaatc |
215 |
Q |
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| T |
42313803 |
aagaatgccagaagcatactgccaatactttacatataagtgaagatcaaaagatagaaaatc |
42313865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 42309733 - 42309897
Alignment:
| Q |
53 |
aaagagaacaatggttgcggtataattacacaatgtaattctgtcaaggaagattgggatatggatgtgaacaagtctttagttttaccatctaaa---a |
149 |
Q |
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|||||||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||||| |||| | || | ||| ||||||||| | |
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| T |
42309733 |
aaagagaacagctgttgcggtaaaattacacggtgtagttctgtcaaggaagaccaggatatggatgtggacaactgttcaacttttccatctaaactca |
42309832 |
T |
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| Q |
150 |
ataaagaatgccagaagcatactgccaatactttacaagtaagtgaagatcaaaagatagaaaat |
214 |
Q |
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| T |
42309833 |
acgaagaataccagaagcatgttgccaatactttacaagttaatgaagatcaaaagatagaaaat |
42309897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 42308788 - 42308856
Alignment:
| Q |
53 |
aaagagaacaatggttgcggtataattacacaatgtaattctgtcaaggaagattgggatatggatgtg |
121 |
Q |
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| T |
42308788 |
aaagagaacaacggttgcggtataattacacagtgcggttctgtcaagaaagacgaggatatggatgtg |
42308856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 42308597 - 42308677
Alignment:
| Q |
51 |
aaaaagagaacaatggttgcggtataattacacaatgtaattctgtcaaggaagattgggatatggatgtgaacaagtctt |
131 |
Q |
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|||||||||| || ||||| |||| ||||||||| ||| |||||||||| |||| ||||||||||||| |||| |||| |
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| T |
42308597 |
aaaaagagaaaaacggttgtggtacaattacacagtgtggttctgtcaagaaagaccaggatatggatgtggacaactctt |
42308677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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