View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_41 (Length: 247)
Name: NF9620_low_41
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27646117 - 27646328
Alignment:
| Q |
1 |
tgggactgaggagaacatacagctcaatggaagtagtccctgcagttgcgtgcagatgatactggtttatagnnnnnnnn---tgactgttattaaaagt |
97 |
Q |
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| T |
27646117 |
tgggactgaggggaacatacagctcaatgaaagtagtctctgcagttgcgtgcagatgatactggtttatagaagaaaaaaaatgactgttattaaaagt |
27646216 |
T |
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| Q |
98 |
ttttgtggtatacagatgaaataaaagtcgaacaatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttag |
197 |
Q |
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| T |
27646217 |
ttttgtggtatacagatgaaataaaagtcgaacaatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttag |
27646316 |
T |
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| Q |
198 |
ccacccagaatc |
209 |
Q |
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| T |
27646317 |
ccacccagaatc |
27646328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 27643059 - 27643143
Alignment:
| Q |
146 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctg |
230 |
Q |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctg |
27643143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 50247819 - 50247750
Alignment:
| Q |
159 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatc |
228 |
Q |
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| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatc |
50247750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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