View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_7 (Length: 478)
Name: NF9620_low_7
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 27227520 - 27227145
Alignment:
| Q |
16 |
gcacagatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattcacaacactcagcaacagaaacactgata |
115 |
Q |
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| T |
27227520 |
gcacagatggtaaaatcagttcataagctcaaataagtaaatccaaacaaaatcccataaaacacatcattgacaacactcagcaacagaaacactgata |
27227421 |
T |
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| Q |
116 |
ataattaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27227420 |
ataattaaaaatctaaacaaaaccacttgcaaattaaacactgataatagacccaaacgcaatttcattgaaccttaaccgttgaatcgacttctctcat |
27227321 |
T |
|
| Q |
216 |
cagagactcgtcacacttcctcttgcttccttggaggacggcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaagtcaacttttt |
315 |
Q |
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||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
27227320 |
cagagactcatcacacttcctcttgcttcgttgcaggatagcggcgccatcgtttcttctgctgggctatgagaagtgacttcattaaactcaactttat |
27227221 |
T |
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| Q |
316 |
aaattgacaaaaaattcaacatttttaataaattatccgtttacttttcaaaagttattactccgtacttatttgat |
392 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
27227220 |
aaattgacaaaaaagtcaacatttttaataaattatccgtttacttttc-aatgttatgactccgtacttatttgat |
27227145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 753154 - 753126
Alignment:
| Q |
37 |
cataagctcaaataagtaaatccaaacaa |
65 |
Q |
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| T |
753154 |
cataagctcaaataagtaaatccaaacaa |
753126 |
T |
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