View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_8 (Length: 471)
Name: NF9620_low_8
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Complemental strand, 18478832 - 18478389
Alignment:
| Q |
12 |
agcacagagacttctaatgtaaagctaacctgcaacacaaaccaatagatgcagttacatttaaattattcaactttctcacattattatttgtgttgtg |
111 |
Q |
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| T |
18478832 |
agcacagagacttctaatgtaaagctaacctgcgacacaaaccaatagatgcagttacatttaaattattctactttctcacattattatctgtgttgtg |
18478733 |
T |
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| Q |
112 |
tccggtgttagtatgaatgtatcaagttcttcgtaactttgtatttttgttggaacactcttacttattcttcttttttgactgataactttgtatttta |
211 |
Q |
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| T |
18478732 |
tccgatgttagtatgaatgtatcaagttcttcgtaactttgtatttttgttggaacactcttacttattcttcttttttgactgataactttgtatttta |
18478633 |
T |
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| Q |
212 |
gttggaattctcttgttttttcttcttaaaaatccattta-tttgctttttcnnnnnnnntaaaacatgtgatacaatatcttatgtgaccttgtctcat |
310 |
Q |
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| T |
18478632 |
gttggaattctcttgttttttcttcttaaaaacacatttattttgctttttcaaaaaaaataaaacatgtgatacaatatcttatgtgaccttgtctcat |
18478533 |
T |
|
| Q |
311 |
taggagtagggtttcttttatcgtttgtattctctcaaggttttagtgcttttggtaaatcactgtgcttcaaaattatatgtctctcttgttataactt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18478532 |
taggagtagggtttcttttatcgtttgtattctctcaaggttttagtgcttttggtaaatcactgtgcttcaaaattatatatctctcttgttataactt |
18478433 |
T |
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| Q |
411 |
catagaaacaaaatcattaaaacaagtgcagtctccatgtaaat |
454 |
Q |
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| T |
18478432 |
catagaaacaaaatcattaaaacaagtgcagtctccatgtaaat |
18478389 |
T |
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