View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9620_low_9 (Length: 454)
Name: NF9620_low_9
Description: NF9620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9620_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 46496436 - 46496857
Alignment:
| Q |
17 |
agtctactcatggcctaattttgctgggcttatggatatgaatatatgattctgtatgtgttatggtgattgcttttttagacatttagcaattgttcac |
116 |
Q |
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| T |
46496436 |
agtctactcatggcctaattttgctgggcttatggatttgaatatatgattctgtatgtgttatggtgattgcttttttagacatttagcaattgttcac |
46496535 |
T |
|
| Q |
117 |
atacatccatcgaactctagtcaattgtcgtttgacatttttaaaattggtagtcaattgcgttagatgttttttaaatcggcaatctttaaattggata |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
46496536 |
atacatccatcgaatcctagtcaattgtcgtttgacatttttaaaattggtagtcaattgcattcaatgttttttaaatcggaaatctttaaattggata |
46496635 |
T |
|
| Q |
217 |
ttgatttnnnnnnncgtcaaacgacaattgattaccgttcaatatttctaggtgcatgcctagagagcaacttgaataaaaacatcattattacctttgc |
316 |
Q |
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||||||| ||| |||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
46496636 |
ttgattt-aaaaaacgttaaacgataattgactacggttcaatatttctaggtgcatgtctagagagcaacttgaataaaaacatcattattatgtttgc |
46496734 |
T |
|
| Q |
317 |
ctcgtaggctgaacatgagtattattacctctgtctctctactatgaacttcacctttgagaacacacatcaccgccgaacttgatcatcaaggcttcct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46496735 |
ctcgtaggctgaacatgagtattattacctctgtctctctactatgaacttcacctttgagaacacacatcaccgccgaacttgaccatcaaggcttcct |
46496834 |
T |
|
| Q |
417 |
ctcttaacactttgcaacctttg |
439 |
Q |
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||||||||||||||||||||||| |
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| T |
46496835 |
ctcttaacactttgcaacctttg |
46496857 |
T |
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