View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_high_5 (Length: 437)
Name: NF9621_high_5
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 202 - 428
Target Start/End: Original strand, 30477433 - 30477666
Alignment:
| Q |
202 |
gttgagatatcaaagtcacctcatccgggttgaagagctaggtgaagttttaaaacctcttcattgtctattcattgtaatttcataatcttgt---cat |
298 |
Q |
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| T |
30477433 |
gttgagatatcaaagtcacctcatctgggttgaagagctaggtgaagttttaaaacctcttcattgtctattcattgtaatttcataatcttgttgtcat |
30477532 |
T |
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| Q |
299 |
ctctcttttgattacg----aacggctagatttctttgaataggtcaagtagatgaacttcttcgtagctaatagctacatgaaccatgtaattccttga |
394 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
30477533 |
ctctcttttgattacgtacgaacggctagatttctttgaataggtcaagtagatgaacttcttcgtagctaatagctacttaaaccatgtaattcgttga |
30477632 |
T |
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| Q |
395 |
gtacttctttatgcaaatgaattattagtattat |
428 |
Q |
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| T |
30477633 |
gtacttctttatgcaaatgaattattagtattat |
30477666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 30477221 - 30477406
Alignment:
| Q |
18 |
tattttcctttgttttactggaaaatggtacaaacatgagccccttttgttgagctttgggaggttaacttcgttggagtaagctgccaaagtcctttta |
117 |
Q |
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| T |
30477221 |
tatttacctttgttttactggaaaatggtacaaacatgaggcccttttgttgagctt-gggaggttaacttcgttggagtaagctgccaaagtcctttta |
30477319 |
T |
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| Q |
118 |
attaggttttgaagtcagcatgtcaaagtcctctcattcaagttgaagaactaagttgggaccttcctttacttaggttctgaagtt |
204 |
Q |
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| T |
30477320 |
attaggttttgaagtcagcatgtcaaagtcctctcattcaagttgaagaactaagttgggaccttcctttacttaggttctgaagtt |
30477406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 10068294 - 10068241
Alignment:
| Q |
375 |
tgaaccatgtaattccttgagtacttctttatgcaaatgaattattagtattat |
428 |
Q |
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| T |
10068294 |
tgaaccatgtaatccgttgagtacttccatatgcaattgaattcttagtattat |
10068241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 32688790 - 32688676
Alignment:
| Q |
255 |
aacctcttcattgtctattcat-tgtaatttcataatcttgt---catctctcttttgattacgaacggctagatttctttgaataggtcaagtagatga |
350 |
Q |
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| T |
32688790 |
aacctcttcatcatctgttcatgtgtaatttcttaatcttgtagccatgtctcttttgattatgagtagttagatttctttgattatgtcatatagatga |
32688691 |
T |
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| Q |
351 |
acttcttcgtagcta |
365 |
Q |
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||| |||| |||||| |
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| T |
32688690 |
actgcttcctagcta |
32688676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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