View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_1 (Length: 524)
Name: NF9621_low_1
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 235 - 511
Target Start/End: Original strand, 8253367 - 8253643
Alignment:
| Q |
235 |
taaaatactactaacctccctgttgtttgaggaacgcagcaaaaccttgtcagcacccatcgaaataatatcaagtgaatcaaatccagcataaaaaata |
334 |
Q |
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| T |
8253367 |
taaaatactactaacctccctattgtctgaggaacgcagcaaaaccttgtcagcacccatcagaataatatcaagtgaatcaaatccagcataaaaaata |
8253466 |
T |
|
| Q |
335 |
cagcgttgtaaaaccggtatcgcctctccattcaacactgtcaccactaaacccttagaatcccataacacatcatcaatttcagaccgatactttggaa |
434 |
Q |
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|||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253467 |
cagcgttgtaaaaccggtatcgtctatccaatcaacactgtcaccactaaacccttagaatcccataacacatcatcaatttcagaccgatactttggaa |
8253566 |
T |
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| Q |
435 |
catacagctgttttgagttaactgcgacatgatcatccttctttaacacattgtctataatcttttcctctctcccc |
511 |
Q |
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| T |
8253567 |
catacaactgttttgagttaactgcgacatgatcatccttctttaacacattgtctataatctcttcctctctcccc |
8253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 8253197 - 8253370
Alignment:
| Q |
20 |
acgtgcataatccaacccgtccttatcccgagtaaaattgtcgagtcgcatcaaacgaccacaatcagttacacaaagtttgaaaaattaaagttccatg |
119 |
Q |
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| T |
8253197 |
acgtgcataatccaacctgtccttatccagagtaaaattgtcgactcacatcaaacgaccacaatcagttacacaaagtttgaaaaattaaagttccatg |
8253296 |
T |
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| Q |
120 |
catgaagtggcacaccataaattcggacccacgctcctctttcatgaaccactacttctctattccaccttaaa |
193 |
Q |
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| T |
8253297 |
catgaagtggcacaccataaattcggacccacgctcctctttcacgaaccactacttctctattccaccttaaa |
8253370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 410
Target Start/End: Original strand, 12787871 - 12787967
Alignment:
| Q |
314 |
tcaaatccagcataaaaaatacagcgttgtaaaaccggtatcgcctctccattcaacactgtcaccactaaacccttagaatcccataacacatcat |
410 |
Q |
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||||| || |||||||||||||| | ||||| ||| || || ||||||||||||| ||||||||||||||| ||||| || ||||||||| ||||| |
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| T |
12787871 |
tcaaaacccgcataaaaaatacaacattgtacaacaggaatagcctctccattcagcactgtcaccactaatccctttgatgcccataacaaatcat |
12787967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 19158193 - 19158287
Alignment:
| Q |
78 |
ccacaatcagttacacaaagtttgaa-aaattaaagttccatgcatgaagtggcacaccataaattcggacccacgctcctctttcatgaaccac |
171 |
Q |
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||||||||| |||||||||||| || |||||||| |||| ||||| ||||||||||||||||||| |||||| |||||||||| ||||||| |
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| T |
19158193 |
ccacaatcaaatacacaaagtttaaagaaattaaaattccgagcatgtagtggcacaccataaattcacacccacactcctctttctcgaaccac |
19158287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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