View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_11 (Length: 435)
Name: NF9621_low_11
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Original strand, 41958902 - 41959304
Alignment:
| Q |
15 |
aggaggaaattaaggagatgttgatcataattataatgagacaagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41958902 |
aggaggaaattaaggagatgttgatcataattataatgagacaggtaattgaatactgtaatcaaaattgtaattgaacaaaggaagacttggtagagaa |
41959001 |
T |
|
| Q |
115 |
ttgataaggaacattaattggcctctgtagtataatttgagacatgaattt-ggtatcttgaaacttctcaatcgtgtggtatatgatttgaggggagag |
213 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41959002 |
ttgatgaggaacattaattggcctctgtagtataatttgagacatgaatttgggtatcttgaaacttctcaatcgtgtggtatatgatttgaggggagag |
41959101 |
T |
|
| Q |
214 |
aggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcagnnnnnnnngtttctaattaccaaa |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
41959102 |
aggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctataactctagctgatgcag-tttttttgtttctaattaccaaa |
41959200 |
T |
|
| Q |
314 |
aataagggaagttatgttgacagtggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataattaggaggtatattgtgca |
413 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
41959201 |
aataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagttcagccactaagccaaataattagggggtatattgtgca |
41959300 |
T |
|
| Q |
414 |
acct |
417 |
Q |
| |
|
|||| |
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|
| T |
41959301 |
acct |
41959304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 46 - 417
Target Start/End: Original strand, 40842111 - 40842486
Alignment:
| Q |
46 |
tataatgagacaagtaattgaatactgtaaa--------caaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcc |
137 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40842111 |
tataatgagacaagtaattgaatactataaatctataatcaaaattgtaattgaacaaaggaagacttggtagagaattgataaggaacattaattggcc |
40842210 |
T |
|
| Q |
138 |
tctgtagtataatttgagacatgaatttgg-tatcttgaaacttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgc |
236 |
Q |
| |
|
||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842211 |
tct--agtataatttgagacatggatttgggtatcttagaacttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgc |
40842308 |
T |
|
| Q |
237 |
ttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcagnnnnnnnngtttctaattaccaaaaataagggaagttatgttgacag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |
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|
| T |
40842309 |
ttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcag---tttttgtttctaattacaaaaaataagggaagttatgttgatag |
40842405 |
T |
|
| Q |
337 |
tggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataattaggaggtatattgtgcaacct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40842406 |
tggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataattaggaggtatattgtgcaacct |
40842486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 42078211 - 42078265
Alignment:
| Q |
348 |
ctaatgttgctattatttatctcaagtgcagccactaagccaaataattaggagg |
402 |
Q |
| |
|
|||||||||| ||||||| || ||||| |||| |||||||||||||||||||||| |
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|
| T |
42078211 |
ctaatgttgccattatttctcacaagtacagctactaagccaaataattaggagg |
42078265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 29587244 - 29586844
Alignment:
| Q |
15 |
aggaggaaattaaggagatgttgatcataattataatgagacaagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaa |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
29587244 |
aggaggaaattaaggagaagttgatcataattataatgagacaagtaattgaatattgtaatcaaaattgtaattgaacaaaggaagacttg-tagagaa |
29587146 |
T |
|
| Q |
115 |
ttgataaggaacattaattggcctctgtagtataatttgagacatgaatttgg-tatcttgaaacttctcaatcgtgtggtatatgatttgaggggagag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29587145 |
ttgataaggaacattaattggcctctgtagtataatttgagacatgaatttgggtatcttgaaacttctcaatcgtgtgatatatgatttgaggggagag |
29587046 |
T |
|
| Q |
214 |
aggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcagnnnnnnnngtttctaattaccaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29587045 |
aggagaacttacatgcttaatgcttttccaattcaatttacgacggcttattcttctatgactctagctgatgcag---tttttgtttctaattaccaaa |
29586949 |
T |
|
| Q |
314 |
aataagggaagttatgttgacagtggattgaatactaatgttgctatta-tttatctcaagtgcagccactaagccaaataattaggaggtatattgtgc |
412 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29586948 |
aataagggaagttatgttgatagtggattgaatactaatgttgctattattttctctcaagtgcagccactaagccaaataattaggaagtatattgtgc |
29586849 |
T |
|
| Q |
413 |
aacct |
417 |
Q |
| |
|
||||| |
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|
| T |
29586848 |
aacct |
29586844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 9993022 - 9992746
Alignment:
| Q |
15 |
aggaggaaattaaggagatgttgatcataattataatgagacaagtaattgaatactgtaaacaaaattgtaattgaacaaaggaagacttggtagagaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9993022 |
aggaggaaattaaggagatgttgattataattataatgagacaagtaattgaatactgtaatcaaaattgtaattgaacaaaggaagacttggtagagaa |
9992923 |
T |
|
| Q |
115 |
ttgataaggaacattaattggcctctgtagtataatttgagacatgaattt-ggtatcttgaaacttctcaatcgtgtggtatatgatttgaggggagag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
9992922 |
ttgataaggaacattaattggcctctgtagtatagtttgtgacatgaatttgggtatcttgaaacttctcaaccgtgtggtatatgatttgagaggagag |
9992823 |
T |
|
| Q |
214 |
aggagaacttacatgcttaatgcttttcaaattcaatttacggtg----acttattcttctatgactctagctgatg |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
9992822 |
aggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttacttattcttctatgactctagttgatg |
9992746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 9992594 - 9992475
Alignment:
| Q |
298 |
gtttctaattaccaaaaataagggaagttatgttgacagtggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataatta |
397 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
9992594 |
gtttctaattaccaaaaataagggaacttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaataatta |
9992495 |
T |
|
| Q |
398 |
ggaggtatattgtgcaacct |
417 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9992494 |
ggaggtatattgtgcaacct |
9992475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 41943780 - 41943835
Alignment:
| Q |
348 |
ctaatgttgctattatttatctcaa-gtgcagccactaagccaaataattaggagg |
402 |
Q |
| |
|
|||||||||| ||||||| || ||| || ||||||||||||||||||||||||||| |
|
|
| T |
41943780 |
ctaatgttgccattatttctcacaatgtacagccactaagccaaataattaggagg |
41943835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 10345414 - 10345467
Alignment:
| Q |
348 |
ctaatgttgctattatttatctcaagtgcagccactaagccaaataattaggagg |
402 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10345414 |
ctaatgttgccattatttctcacaagtacagccactaagcc-aataattaggagg |
10345467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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