View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_13 (Length: 416)
Name: NF9621_low_13
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_13 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 883731 - 883523
Alignment:
| Q |
76 |
tcatcttgtttgataccaacacagcacttacacatataatcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgt |
175 |
Q |
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| T |
883731 |
tcatcttgtttgataccaatacaacactgacaaatgtagtcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgt |
883632 |
T |
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| Q |
176 |
atgtgttcctgcttcatatcacttgttgatttgaatgagttatcagatgtttgggtttgaggaagttgagacccctgactttggagagttaaaggttata |
275 |
Q |
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| T |
883631 |
atgtgttcatgcttcatatcacttgttgatttgaacgagttatcagatgtttgggtttgaggaagttgagacccctgactttggagagttaaagattata |
883532 |
T |
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| Q |
276 |
tggttgcgc |
284 |
Q |
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| T |
883531 |
tggttgcgc |
883523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 883505 - 883399
Alignment:
| Q |
308 |
acttatccatctcatacaacgtagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctctgc |
407 |
Q |
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| T |
883505 |
acttatccatctcatacaacatagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctttgc |
883406 |
T |
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| Q |
408 |
ttctcca |
414 |
Q |
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| T |
883405 |
ttctcca |
883399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
105 |
acacatataatcacattgaattatgtaactttttaaaattattat |
149 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
105 |
acacatataatcacattgaattatgtaactttttaaaattattat |
149 |
Q |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
107 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
159 |
Q |
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| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
100 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
148 |
Q |
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| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
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