View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_14 (Length: 413)
Name: NF9621_low_14
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 41278500 - 41278736
Alignment:
| Q |
172 |
caattaaggctgcttcgggtggactgctaataaggatttaaggcggaatttccaacggtatcattaaatcctattttgtgcccttccatgatgtaacata |
271 |
Q |
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| T |
41278500 |
caattaaggctgcttcgggtggactgctaataaggatttaaggcggaatttccaacggtatcattaaatcctattttgtgcccttccatgatgtaacata |
41278599 |
T |
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| Q |
272 |
gtttatagacaattgtgacccaatc----attagatgtgaactactttttaaattgtgtggtttagatcatactaatttgttagtaatatatataattaa |
367 |
Q |
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| T |
41278600 |
gtttatagacaattgtgacccaatcattaattagatgtgaactactttttaaattgtgtggtttaggtcatactaatttgttagtaatatatataattaa |
41278699 |
T |
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| Q |
368 |
atatatcatatttccatggtcatttgtccccctttgc |
404 |
Q |
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| T |
41278700 |
atatatcatatttccatggtcatttgtccccctttgc |
41278736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 41278369 - 41278509
Alignment:
| Q |
18 |
ttaggcttcaaccccacaaacctaacttgtaatgtgaggactctggaaaccataatgactatttcagtcatatcccgaggcaacgtgggactaaaaccac |
117 |
Q |
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| T |
41278369 |
ttaggcttcaaccccacaaacctaacttgtaatgtgaggactctggaaaccataatgactatttcagtcatatcccgaggcaacgtgggactaaaaccac |
41278468 |
T |
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| Q |
118 |
acccaacacacaatgacgatgttggagtatgcaattaaggc |
158 |
Q |
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| T |
41278469 |
acccaacacacaatgacgatgttggagtatgcaattaaggc |
41278509 |
T |
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