View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9621_low_17 (Length: 410)
Name: NF9621_low_17
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 50764959 - 50764573
Alignment:
| Q |
7 |
cagaacctgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagccagtaggtctttgttttttaagcatgattgcatgaacga |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764959 |
cagaacgtgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagccagtaggtctttgttttttaagcatgattgcatgaacga |
50764860 |
T |
|
| Q |
107 |
atagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaataaagctgcacgatgacataacagaagcagcaaccagttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764859 |
atagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaataaagctgcacgatgacataacagaagcagcaaccagttg |
50764760 |
T |
|
| Q |
207 |
caactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764759 |
caactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccctaaatgaatcaaagtgatagaaaacaacttgataagcct |
50764660 |
T |
|
| Q |
307 |
ctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatgaacct |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50764659 |
ctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatgaacct |
50764573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 35153576 - 35153489
Alignment:
| Q |
304 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatga |
389 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatga |
35153489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University