View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_18 (Length: 409)
Name: NF9621_low_18
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 212 - 397
Target Start/End: Original strand, 32451024 - 32451209
Alignment:
| Q |
212 |
gtatgtacattcattttaactttannnnnnncttcttgacatggtgtgtaagatcgtatatttgttattaacattgatccaacgtaaattaagtgtggct |
311 |
Q |
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| T |
32451024 |
gtatgtacattcattttaactttatttttttcttcttgacatggtgtgtaagatcgtatatttgttattaacattgatccaacgtaaattaagtgtggct |
32451123 |
T |
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| Q |
312 |
tggcacggtggaaggtaagcatatagagtgaatttgtctaaatttgctattgatgctagtgttattgtttatcctatgatgtccat |
397 |
Q |
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| T |
32451124 |
tggcacggtggaaggtaagcatatagagtgaatttgtctaaatttgctattgatgctagtgttattgtttatcctatgatgtccat |
32451209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 32450830 - 32450919
Alignment:
| Q |
18 |
aaaactcttacttgtgacttcgtcgcgaaatagcttttcgtgaggttgagaattacttttaaaatattttctaccttagattgagacacc |
107 |
Q |
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| T |
32450830 |
aaaactcttacttgtgacttcgtcgtgaaatagcttttcgtgaggttgagaattacctttaaagtattttctaccttagattgagacacc |
32450919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 32450949 - 32450978
Alignment:
| Q |
137 |
catagtaatatttcttttgacatcacgaat |
166 |
Q |
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| T |
32450949 |
catagtaatatttcttttgacatcacgaat |
32450978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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