View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_22 (Length: 401)
Name: NF9621_low_22
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 39224967 - 39224655
Alignment:
| Q |
1 |
ctttgtagctatgtgttgtgttgaggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaatgctaggacaagtaaagcaaccaaatatattt |
100 |
Q |
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| T |
39224967 |
ctttgtagctatgtgttgtgttgaggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaatgctaggacaagtaaagcaaccaaatatattt |
39224868 |
T |
|
| Q |
101 |
caagtgtaatgagtgagtcatcaaggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgcatgtatgtgttcatgttggctag |
200 |
Q |
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| T |
39224867 |
caagtgtaatgagtgagtcatcaaggaaattattataaataagagaaagaagaaataaagaataaggtgtgacttgtatctatgtgttcatgttggctag |
39224768 |
T |
|
| Q |
201 |
gtgttaatttttcctaactagctagtttgtgttatttgaaaattttgaagattttgtttaactatttattagctagagttggacctgttcnnnnnnntaa |
300 |
Q |
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| T |
39224767 |
gtgttaa-ttttcctaactagctagtttgtgttatttgagaattttgaagattttgtttaactatttattagctagagttggacctgttcaaaaaaataa |
39224669 |
T |
|
| Q |
301 |
aactatagttggta |
314 |
Q |
| |
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|||||||||||||| |
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| T |
39224668 |
aactatagttggta |
39224655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 16737271 - 16737357
Alignment:
| Q |
17 |
tgtgttgaggaacaaagtgtggaacgaccaaccatgagagaagtggttgaaatgctaggacaagtaaagcaaccaaatatatttcaa |
103 |
Q |
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|||||| | ||||| |||||||| ||||||||||||| ||||||||||| ||||| | ||||| |||| ||| | | ||||||||| |
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| T |
16737271 |
tgtgttcatgaacatagtgtggagagaccaaccatgagggaagtggttgagatgcttgcacaagcaaagtaacaatacatatttcaa |
16737357 |
T |
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