View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_24 (Length: 347)
Name: NF9621_low_24
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 45675362 - 45675677
Alignment:
| Q |
19 |
accagacacaggggccatttcgtaatcatctactatgtagtgaactcactcggtgcttatctctatatttccccttcccaaagattttgtactgtgtttt |
118 |
Q |
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| T |
45675362 |
accagacacaggggccatttcgtaatcatctactatgaagtgaactcactcggtgcttatctctatatttccctttcccaaagattttgtactgtgtttt |
45675461 |
T |
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| Q |
119 |
ctcttattctcaattgaagaaaggagtatgtaaaaactttaatatttcatctaatgtaaatgtgagtattttaatttaattttacatactccatggctag |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
45675462 |
ctcttattctcaattgaagaaaggagtatgtacgtactttaatatttcatctaatgtaaatgtgagtatcttaatttaattttacattctccatggctag |
45675561 |
T |
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| Q |
219 |
taccatatgctgcttgagtgtatgtttcgttcactttgaagggatcaaaatcgacggtagagatgttatattgattttgatgtgtttgattgttttaaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45675562 |
taccatatgctgcttgagtgtatgtttcgttcactttgaagggatcaaaatcgacggtagaaatgttatattgattttgatgtgtttgattgttttaaag |
45675661 |
T |
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| Q |
319 |
tagatttggtgtatct |
334 |
Q |
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|||||||||||||||| |
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| T |
45675662 |
tagatttggtgtatct |
45675677 |
T |
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