View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_25 (Length: 332)
Name: NF9621_low_25
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 28250309 - 28250036
Alignment:
| Q |
16 |
gacatcagatcaaaacaacgaagccttctacagttaattatcaatctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
115 |
Q |
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| T |
28250309 |
gacatcagatcaaaacaacgaagccttctagagttaattatcaatctcttcccttcggagaaagcagcttttccaatcaacttcctttgctgcctcctcc |
28250210 |
T |
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| Q |
116 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250209 |
gttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgt |
28250110 |
T |
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| Q |
216 |
gatgtcattctcctacgacggcgagaaactctttgatctagaaagcgttcgcagaatcatctcagtcttcgttg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250109 |
gatgtcattctcctacgacggcgagaaactctttgatctagaaagcgttcgcagaatcatctcagtcttcgttg |
28250036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 278
Target Start/End: Complemental strand, 32179846 - 32179628
Alignment:
| Q |
60 |
tctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacctccgcgcctccaccgtctgcaaaaccgaa |
159 |
Q |
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|||||| || || |||||||| |||||||| ||||||||||| ||||| || |||||||| || ||| |||| |||||||| | || ||||| |||| |
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| T |
32179846 |
tctctttccgtcggagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaa |
32179747 |
T |
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| Q |
160 |
ctcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatgtcattctcctacgacggcgagaaactctttgatctagaaa |
259 |
Q |
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|||||||| ||||| | | ||| || |||||||| || || |||| ||| | || |||||||| ||||||||||||||| || | ||||| || | |
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| T |
32179746 |
ctcgagaagcgaatagctgaaattctggaacacgtaacagtgaacgatctcttggttctgtcattcacctacgacggcgagaggcttctggatcttgata |
32179647 |
T |
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| Q |
260 |
gcgttcgcagaatcatctc |
278 |
Q |
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|| |||| ||||||||||| |
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| T |
32179646 |
gcattcggagaatcatctc |
32179628 |
T |
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