View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_28 (Length: 323)
Name: NF9621_low_28
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 41883446 - 41883748
Alignment:
| Q |
1 |
tgaaggtatgcctactcaagtgatggtgacctccacagttttccacttaaagaaaaatgttgttttcnnnnnnnnnnnnnnnnnnnnnnngagaagtgta |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
41883446 |
tgaaggtatgtctactcaagtgatggtgacctccacagttttccacttaa-gaaaaatgttgttttcttatttatatatttattattattgagaagtgta |
41883544 |
T |
|
| Q |
101 |
agaaactctccctaacactcttcttctagtccactatctattgttgttttctgtactaaatatttaagttgttcgatcactcagagtagagcgccttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41883545 |
agaaactctccctaacactcttcttctagtccactatctattgttgttttctgtactaaatatttaagttgttcgatcactcagagtagagcgtcttcat |
41883644 |
T |
|
| Q |
201 |
tctttgtgttggaacaagtattttggtcaataagattggacttaaggttgatttacacnnnnnnnnnnacttaaacattttgcatgtatgacacattttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41883645 |
tctttgtgttggaacaagtattttggtcaataagattggacttaaggttgatttaca-ttttttttttacttaaacattttgcatgtatgacacattttt |
41883743 |
T |
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| Q |
301 |
atgat |
305 |
Q |
| |
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||||| |
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| T |
41883744 |
atgat |
41883748 |
T |
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