View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_4 (Length: 500)
Name: NF9621_low_4
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 2375356 - 2375854
Alignment:
| Q |
1 |
ttggaagttgacaatttaccaattttcttagaatatgcttccacaatatttgggtaattgctattgatttctcatatgtgctcttgcttattagtcatga |
100 |
Q |
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| T |
2375356 |
ttggaagttgacaatttaccaattttcttagaatatgcttccacaatatttgggtaattgctattgatttctcatatgtgctcttgcttattagtcatga |
2375455 |
T |
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| Q |
101 |
atttgagacaatctttgaccaaagagaatgagaaaatgaaatctaagaaaataacttaattaattaggtggaaaaatgaagaaaaggataataatgagtt |
200 |
Q |
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| T |
2375456 |
atttgagacaatctttgaccaaagagaatgagaaaatgaaatctaagaaaataacttaattaattaggtggaaaaatgaagaaaagggtaataatgagtt |
2375555 |
T |
|
| Q |
201 |
cagctaataactttagaggcttgagacgtggcaagagggaccacaatggtcctttgataatttgtaaatcctttgatcaaaatttcaatgtctagttggt |
300 |
Q |
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| T |
2375556 |
cagctaataactttagaggcttgagacgtggcaagagggaccacaatggtcctttgataatttgtaaatcctttgatcaaaatttcaatgtctagttggt |
2375655 |
T |
|
| Q |
301 |
gaagaacaccaccaaagtccgcnnnnnnncaattttgtttaggttatttatttgtcagcttgaaataggtttcataatataaaattggtttatgtctatt |
400 |
Q |
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| T |
2375656 |
gaagaacaccaccaaagtccgcaaaaaaacaattttgtttaggttatttatttgtcagcttgaaataggtttcataatataaaattggtttatgtctatt |
2375755 |
T |
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| Q |
401 |
agtccttgattcaaatataggcttctattgttgcatcaaagccaatttcacatccaaacccgtgaccatataattatacaactcttctaagtttgaaac |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2375756 |
agtccttgattcaaatataggcttctattgttgcatcaaagccaatttcacatccaaacccgtgaccatataattatacaactcttctaagtttgaaac |
2375854 |
T |
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