View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_40 (Length: 247)
Name: NF9621_low_40
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 33206625 - 33206413
Alignment:
| Q |
13 |
attatactctattgtatgagtttagtcctcttccatatccactctcttttcatttgagtttataaatttctgaattcacaagctgcctcattgggggtaa |
112 |
Q |
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| T |
33206625 |
attatactctattgtatgagtttagtcctcttccacatccactctcttttcatttgagtttataaatttctgaattcacaagctgcctcattgggggtaa |
33206526 |
T |
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| Q |
113 |
acctcaaacatcatacgtagcattaaaaactagagtggtggattttaatgtttaagagagtaaacacaacataacagtttctggattgaaaaaattattc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33206525 |
acctcaaacatcatacttagcattaaaaactagagtggtggattttaatgtttaagagagtaaacacaacataacagtttctggattgaaaaaattattc |
33206426 |
T |
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| Q |
213 |
acaaaccaatcaa |
225 |
Q |
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||||||||||||| |
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| T |
33206425 |
acaaaccaatcaa |
33206413 |
T |
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