View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_48 (Length: 239)
Name: NF9621_low_48
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 39013020 - 39012815
Alignment:
| Q |
1 |
ctcattttgtatatgaaacatgattgcagttaaagacaagaaatccagtaacaagacatcaaagaaaggcatgtgctgcatttgcaatgaaaataaagta |
100 |
Q |
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| T |
39013020 |
ctcattttgtatatgaaacatgattgcagttaaagacaagaaatccagtaacaagacatcaaagaaaggcatgtgctgcatttgcaatgaaaataaagta |
39012921 |
T |
|
| Q |
101 |
aactcagttttatacaggtacttaa---nnnnnnnnctttctactaataattttgttcaatatatttatttcatgtaagcacaatagtactcataatgtc |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39012920 |
aactcagttttatacaggtacttaattttattttatttttctactaataattttgttcaatatatttatttcatgtaagcacaacagtactcataatgtc |
39012821 |
T |
|
| Q |
198 |
tctaca |
203 |
Q |
| |
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|||||| |
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|
| T |
39012820 |
tctaca |
39012815 |
T |
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