View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_50 (Length: 229)
Name: NF9621_low_50
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42946088 - 42945867
Alignment:
| Q |
1 |
tatctatgtccctgttgcctatgaaacttctaaaaaccacaaaacacactaagccttaccttcttttctgtcacaaaatttgagtctctcatttagtgct |
100 |
Q |
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| T |
42946088 |
tatctatgtccctgttgcctatgaaacttctaaaaaccacaaaacacactaagccttaccttcttttctgtcacaaaatttgagtctctcatttagtgct |
42945989 |
T |
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| Q |
101 |
ctcaatttagaagaaacattccaactattcatgttggaaaaaacatcacaagcaaggtaaaacagtacttcaaaaacattttgaaccttccttgtcatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
42945988 |
ctcaatttagaagaaacattccaactattcatgttgg--aaaacatcacaagcaaggtaaaacagtacatcaaaatcattttgaaccttccttgtcatgt |
42945891 |
T |
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| Q |
201 |
tttcttcatagtttctctgcttct |
224 |
Q |
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|||||||||||||| | ||||||| |
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| T |
42945890 |
tttcttcatagtttttgtgcttct |
42945867 |
T |
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