View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_52 (Length: 225)
Name: NF9621_low_52
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 14247889 - 14248086
Alignment:
| Q |
11 |
gacatcatatcggacacgcattccgaaagagctggacaagaaaagattctgagcacaagtgttcaaagaagagtacctcattggtaatgtttcatttaat |
110 |
Q |
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| T |
14247889 |
gacatcatatcggacacgcattccgaaagagctggacaagaaaagattctgagcacaagtgttcaaagaagagtacctcattggtaatgtttcatttaat |
14247988 |
T |
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| Q |
111 |
aaatgacaaannnnnnnnngaattaggaaannnnnnnaagctaggctagcacaagatgcactatacccgccaacaactcaacgaaaaacctcctatac |
208 |
Q |
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| T |
14247989 |
aaatgacaaatttttttttgaattaggaaatttttttaagctaggctagcacaagatgcactatacccgccaacaactcaacaaaaaacctcctatac |
14248086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 4989245 - 4989172
Alignment:
| Q |
34 |
cgaaagagctggacaagaaaagattctgagcacaagtgttcaaagaagagtacctcattggtaatgtttcattt |
107 |
Q |
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| T |
4989245 |
cgaaacagctggggaagaaaagattctgagagtaagagtacaaagaagagtaactcgttggtaatgtttcattt |
4989172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 30367157 - 30367125
Alignment:
| Q |
148 |
aagctaggctagcacaagatgcactatacccgc |
180 |
Q |
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| T |
30367157 |
aagctaggctagcacaagatgcactatacccgc |
30367125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 50191760 - 50191789
Alignment:
| Q |
151 |
ctaggctagcacaagatgcactatacccgc |
180 |
Q |
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| T |
50191760 |
ctaggctagcacaagatgcactatacccgc |
50191789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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