View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9621_low_54 (Length: 220)

Name: NF9621_low_54
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9621_low_54
NF9621_low_54
[»] chr5 (8 HSPs)
chr5 (20-202)||(326467-326650)
chr5 (18-148)||(19524102-19524230)
chr5 (18-138)||(12935980-12936098)
chr5 (18-138)||(12950137-12950256)
chr5 (18-128)||(21389029-21389139)
chr5 (91-138)||(1273281-1273328)
chr5 (91-138)||(22812263-22812310)
chr5 (18-119)||(19827037-19827136)
[»] chr8 (9 HSPs)
chr8 (18-148)||(37473902-37474032)
chr8 (18-138)||(29739520-29739639)
chr8 (72-148)||(37473686-37473762)
chr8 (72-148)||(37473794-37473870)
chr8 (21-129)||(19914793-19914899)
chr8 (88-134)||(21671229-21671273)
chr8 (92-130)||(42871085-42871123)
chr8 (88-134)||(13514748-13514791)
chr8 (88-134)||(13604281-13604324)
[»] chr1 (3 HSPs)
chr1 (18-148)||(13929415-13929545)
chr1 (18-138)||(51725463-51725582)
chr1 (85-136)||(26055084-26055133)
[»] chr3 (2 HSPs)
chr3 (18-129)||(19252887-19252998)
chr3 (85-136)||(11220538-11220587)
[»] chr6 (2 HSPs)
chr6 (18-138)||(31740149-31740268)
chr6 (18-134)||(18773774-18773889)
[»] chr2 (8 HSPs)
chr2 (18-138)||(37867876-37867995)
chr2 (18-138)||(10368262-10368381)
chr2 (18-138)||(11386744-11386862)
chr2 (85-137)||(14716072-14716124)
chr2 (18-110)||(7038244-7038336)
chr2 (18-107)||(4830582-4830671)
chr2 (88-130)||(4513639-4513679)
chr2 (85-133)||(9472885-9472933)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-136)||(96280-96396)
[»] chr7 (7 HSPs)
chr7 (18-138)||(25153778-25153896)
chr7 (25-138)||(46457209-46457322)
chr7 (18-110)||(24873501-24873593)
chr7 (85-134)||(43111620-43111667)
chr7 (87-130)||(7354769-7354812)
chr7 (90-134)||(24494170-24494212)
chr7 (92-128)||(26406391-26406427)
[»] chr4 (7 HSPs)
chr4 (18-138)||(27408883-27409001)
chr4 (18-135)||(28103366-28103482)
chr4 (18-138)||(52659031-52659150)
chr4 (18-135)||(31711212-31711327)
chr4 (18-138)||(43895495-43895613)
chr4 (85-131)||(8682613-8682659)
chr4 (88-132)||(2292340-2292384)
[»] scaffold0046 (1 HSPs)
scaffold0046 (18-138)||(24693-24811)
[»] scaffold0084 (1 HSPs)
scaffold0084 (18-138)||(11826-11944)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 326467 - 326650
Alignment:
Q  20 tttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaatttt-ttccccctttctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  326467 tttaatgtctaatattttttatattgttttgaccatttgattgcaggtccattgtataacacacaaaaccaccaacacctaatttttttccccctttctt 326566  T
Q  119 catcttcttccttccaccacaacctcatatcccccttaatataagaaaatcatatgttgtggaaaattcctttataccctatct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  326567 catcttcttccttccaccacaacctcatatcccccttaatataagaaaatcatatgttgtagaaaattcctttataccctatct 326650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19524102 - 19524230
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||  ||| |||||||||| ||||| |||||||||||| ||||||||||  ||||||||    
T  19524102 tttttaatgtctaataattttgatattgttttgaccattcgattgcaggtccattgtataccacactgaaccaccaacatctaatttttt--ccctttct 19524199  T
Q  118 tcatcttcttccttccaccacaacctcatat 148  Q
    ||||||||||||||||| ||||| |||||||    
T  19524200 tcatcttcttccttccatcacaatctcatat 19524230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 12936098 - 12935980
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| || |||||||||||||||||  |||||| ||||   || |||||||||| ||| | |||||||||||| |||||||||||||     ||    
T  12936098 tttttaatgtttactattttttatattgtttcaaccattcgattgctggtccattgtataccacgctgaaccaccaacatctaattttttcccaag--ct 12936001  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||| ||||||    
T  12936000 tcatcttcttcctttcaccac 12935980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 12950256 - 12950137
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| || |||||||||||||||||  |||||||||||   || |||||||||| |||   |||||||||||| ||||||||||  |||   ||    
T  12950256 tttttaatgtttactattttttatattgtttcaaccatttgattgctggtccattgtataccacgttgaaccaccaacatctaatttttt-tcccaagct 12950158  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||| ||||||    
T  12950157 tcatcttcttcctttcaccac 12950137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 21389139 - 21389029
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||||||| |||||||||||  |||  ||| ||||||| ||||  |||||||||| |||| |||| | ||||||||||| ||||     |||||    
T  21389139 tttttaatgtctaaaattttttatatgttttcaaccgtttgattgtaggttcattgtataaaacactgaactatcaacacctaatcttttttgtttttct 21389040  T
Q  118 tcatcttcttc 128  Q
    |||||||||||    
T  21389039 tcatcttcttc 21389029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 1273281 - 1273328
Alignment:
Q  91 ccaacacctaattttttccccctttcttcatcttcttccttccaccac 138  Q
    |||||||||||||||| |   |||||||||||||||||||||||||||    
T  1273281 ccaacacctaatttttcctttctttcttcatcttcttccttccaccac 1273328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 22812310 - 22812263
Alignment:
Q  91 ccaacacctaattttttccccctttcttcatcttcttccttccaccac 138  Q
    ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  22812310 ccaacacctaattttttctttcttccttcatcttcttccttccaccac 22812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 19827136 - 19827037
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||  ||||| ||||||||| ||||||||||||  ||| ||||   ||| ||||| ||| |||||||||| || ||||  |||||||||    
T  19827136 tttttaatgtctaaattttttgatattgtttcgaccatttgattgcaggtccatcagataccacactgaatcaccaacacccaaatttt--cccctttct 19827039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 37474032 - 37473902
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  ||  |||||||||| ||||  |||||||||||||||||||||||  ||||||||    
T  37474032 tttttaatgtctaatatttttgatattgttttgaccattcgattgcagatccattgtataccacattgaaccaccaacacctaattttttttccctttct 37473933  T
Q  118 tcatcttcttccttccaccacaacctcatat 148  Q
    |||||||||||||||||||||||||||||||    
T  37473932 tcatcttcttccttccaccacaacctcatat 37473902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 29739639 - 29739520
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| |||||||||| ||||  ||| |||| || |||| |||| ||||| |||| ||||| |||||||||||||||||||||||   |||||||    
T  29739639 tttttaatgtttaatatttttgatatgttttcgaccgttcgattgtaggtccattatataccacactgaaccaccaacacctaatttttt-ttcctttct 29739541  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||||||||||    
T  29739540 tcatcttcttccttccaccac 29739520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 37473762 - 37473686
Alignment:
Q  72 tgtataacacacagaaccaccaacacctaattttttccccctttcttcatcttcttccttccaccacaacctcatat 148  Q
    |||||| ||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37473762 tgtataccacattgaaccaccaacacctaattttttttccctttcttcatcttcttccttccaccacaacctcatat 37473686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 37473870 - 37473794
Alignment:
Q  72 tgtataacacacagaaccaccaacacctaattttttccccctttcttcatcttcttccttccaccacaacctcatat 148  Q
    |||||| ||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37473870 tgtataccacattgaaccaccaacacctaattttttttccctttcttcatcttcttccttccaccacaacctcatat 37473794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 19914899 - 19914793
Alignment:
Q  21 ttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttcttca 120  Q
    |||||||||||||||||| ||||| || |||||||||||||  ||| ||||| ||||  |||  |||||||||||||||||||||||  | |||||||||    
T  19914899 ttaatgtctaatatttttgatattattgtgaccatttgattgcaggtccattatatactacaatgaaccaccaacacctaatttttt--ctctttcttca 19914802  T
Q  121 tcttcttcc 129  Q
    |||||||||    
T  19914801 tcttcttcc 19914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 21671273 - 21671229
Alignment:
Q  88 ccaccaacacctaattttttccccctttcttcatcttcttccttcca 134  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||    
T  21671273 ccaccaacacctaatttttt--ccctttcttcatcttctttcttcca 21671229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 42871085 - 42871123
Alignment:
Q  92 caacacctaattttttccccctttcttcatcttcttcct 130  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  42871085 caacacctaattatttctccctttcttcatcttcttcct 42871123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 13514791 - 13514748
Alignment:
Q  88 ccaccaacacctaattttttccccctttcttcatcttcttccttcca 134  Q
    ||||||||| |||||||||   |||||||||||||||||||||||||    
T  13514791 ccaccaacagctaattttt---ccctttcttcatcttcttccttcca 13514748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 13604324 - 13604281
Alignment:
Q  88 ccaccaacacctaattttttccccctttcttcatcttcttccttcca 134  Q
    ||||||||| |||||||||   |||||||||||||||||||||||||    
T  13604324 ccaccaacagctaattttt---ccctttcttcatcttcttccttcca 13604281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 13929415 - 13929545
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||||||||| ||||||||||||||||| |||   ||| |||||||||| ||||  || ||||||||||||||||||||  ||||||||    
T  13929415 tttttaatgtctaatatttttgatattgttttgaccattcgatggcaggtccattgtataccacattgagccaccaacacctaattttttttccctttct 13929514  T
Q  118 tcatcttcttccttccaccacaacctcatat 148  Q
    ||||||||||||| |||||||||||||||||    
T  13929515 tcatcttcttcctcccaccacaacctcatat 13929545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 51725463 - 51725582
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||| ||||||||||||||| |||||| ||| ||| ||||   || ||||| || | |||||  ||||||||| ||||||||||||  | ||||||    
T  51725463 tttttaatctctaatattttttatgttgtttcgactattcgattgctggtccattatacaccacactaaaccaccaatacctaatttttt-tctctttct 51725561  T
Q  118 tcatcttcttccttccaccac 138  Q
     ||||||||||||||||||||    
T  51725562 ccatcttcttccttccaccac 51725582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 26055084 - 26055133
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttccttccacc 136  Q
    |||||| || ||| ||||||||||||  ||||||||||||||||||||||||    
T  26055084 gaaccatcaccacataattttttccc--tttcttcatcttcttccttccacc 26055133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 19252998 - 19252887
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | | ||||| |||| | ||  |||||||||||||||||||||||  ||||||||    
T  19252998 tttttaatgtctaatattttttatattgttttgaccatttgattgcaagtccattatataccgcattgaaccaccaacacctaattttttttccctttct 19252899  T
Q  118 tcatcttcttcc 129  Q
    || ||| |||||    
T  19252898 tcttctccttcc 19252887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 11220587 - 11220538
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttccttccacc 136  Q
    |||||| || ||| ||||||||||||  ||||||||||||||||||||||||    
T  11220587 gaaccatcaccacataattttttccc--tttcttcatcttcttccttccacc 11220538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 31740268 - 31740149
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||||||||||||||| |||| || ||| |||||||||  ||| ||||| ||||  |||  ||||||||| |||||||||||||    ||||||    
T  31740268 tttttaatgtctaatattttttgtattattgtgagcatttgattgcaggtccattatatactacaatgaaccaccagcacctaatttttt-tttctttct 31740170  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||||||||||    
T  31740169 tcatcttcttccttccaccac 31740149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 18773774 - 18773889
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||||| || ||||| ||||  |||| |||||| ||||  | | | ||||||||  |||  |||||||||||||| | |||||| ||| |||||    
T  18773774 tttttaatgtctgatgtttttgatatgattttaaccattcgattgcatgtctattgtatacaacaatgaaccaccaacaccaagtttttttccc-tttct 18773872  T
Q  118 tcatcttcttccttcca 134  Q
    |||||||||||||||||    
T  18773873 tcatcttcttccttcca 18773889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 37867876 - 37867995
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| |||||||||| ||||  ||| |||| || |||| |||| | ||| |||| ||||  |||||||||||||||||||||||   |||||||    
T  37867876 tttttaatgtttaatatttttgatatgttttcgaccgttcgattgtaggtctattatataccacattgaaccaccaacacctaatttttt-ttcctttct 37867974  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||||||||||    
T  37867975 tcatcttcttccttccaccac 37867995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 10368381 - 10368262
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||| | |||||||||| ||||  ||| |||| || ||||  | | ||||| |||| ||||| |||||||||||||||||||||||  || |||||    
T  10368381 tttttaatatttaatatttttgatatgttttcgaccgttcgattgcatgtccattatataccacactgaaccaccaacacctaattttttttcc-tttct 10368283  T
Q  118 tcatcttcttccttccaccac 138  Q
    |||||||||||||||||||||    
T  10368282 tcatcttcttccttccaccac 10368262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 11386744 - 11386862
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| |||||||||| ||||| || ||| |||||||||  ||| ||||| ||||  |||  ||| ||||||| |||||||||||  | ||||||    
T  11386744 tttttaatgtttaatatttttaatattattgtgatcatttgattgcaggtccattatatactacaatgaatcaccaacgcctaatttttt--ctctttct 11386841  T
Q  118 tcatcttcttccttccaccac 138  Q
    || ||||||||||||||||||    
T  11386842 tcgtcttcttccttccaccac 11386862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 14716124 - 14716072
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttccttccacca 137  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  14716124 gaaccaccaacacctaattttttttccctttcttcatctttttccttccacca 14716072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 7038336 - 7038244
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccc 110  Q
    |||||||||| || ||||||| |||||||||  |||||| ||||  | | |||||||||| |||||  ||||||||||| |||||||||||||    
T  7038336 tttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtatatcacactcaaccaccaacatctaattttttccc 7038244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 4830671 - 4830582
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaatttttt 107  Q
    |||| |||||||||||||||| ||||  |||  |||||| |||| |||| ||||||||||  |||  |||||| ||||||||||||||||    
T  4830671 ttttgaatgtctaatatttttgatatgatttcaaccattcgattgtaggtccattgtatacaacattgaaccaacaacacctaatttttt 4830582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 4513679 - 4513639
Alignment:
Q  88 ccaccaacacctaattttttccccctttcttcatcttcttcct 130  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  4513679 ccaccaacacctaatttttt--ccctttcttcatcttcttcct 4513639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 9472885 - 9472933
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttccttcc 133  Q
    |||||| ||||| |||||| ||| |||||||||||||||||||| ||||    
T  9472885 gaaccatcaacaactaattattttcccctttcttcatcttcttcattcc 9472933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 96280 - 96396
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||| |||||||||||| ||||  ||| ||||||| ||||  ||| | ||| | || ||||| |||||||||||||||||||||||  ||||||||    
T  96280 tttttaatatctaatatttttgatatgttttcgaccattcgattgcaggtctattatgtaccacactgaaccaccaacacctaatttttt--ccctttct 96377  T
Q  118 tcatcttcttccttccacc 136  Q
    | |||||||||||||||||    
T  96378 ttatcttcttccttccacc 96396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 25153778 - 25153896
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||| |||||||||||| ||||  ||| |||| || ||||  ||| | ||| | || ||||| |||||||||||||||||||||||  ||||||||    
T  25153778 tttttaatatctaatatttttgatatgttttcgaccgttcgattgcaggtctattatgtaccacactgaaccaccaacacctaatttttt--ccctttct 25153875  T
Q  118 tcatcttcttccttccaccac 138  Q
    || ||||||||||||||||||    
T  25153876 tcttcttcttccttccaccac 25153896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 46457209 - 46457322
Alignment:
Q  25 tgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttcttcatctt 124  Q
    |||||||||||||| ||||  ||| ||||||| |||| |||| |||||||||| |||||  |||||||| || ||||||||||  |||||| || |||||    
T  46457209 tgtctaatatttttgatatgttttcgaccattcgattgtaggtccattgtataccacactaaaccaccagcatctaattttttttccctttttttatctt 46457308  T
Q  125 cttccttccaccac 138  Q
    |||| |||||||||    
T  46457309 cttctttccaccac 46457322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 24873593 - 24873501
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccc 110  Q
    |||||||||| || ||||||| |||||||||  |||||||||||   ||  ||||||||| ||| | |||||||||||| |||||||||||||    
T  24873593 tttttaatgtttactatttttgatattgtttcaaccatttgattgctggttcattgtataccacgctgaaccaccaacatctaattttttccc 24873501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 43111620 - 43111667
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttccttcca 134  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  43111620 gaaccaccaacgcctaattttt--cccctttcttcatcttcttccttcca 43111667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 7354769 - 7354812
Alignment:
Q  87 accaccaacacctaattttttccccctttcttcatcttcttcct 130  Q
    ||||||| || ||||||||||||| |||||||||||||||||||    
T  7354769 accaccatcaactaattttttccctctttcttcatcttcttcct 7354812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 24494170 - 24494212
Alignment:
Q  90 accaacacctaattttttccccctttcttcatcttcttccttcca 134  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  24494170 accaacacctaattttttcca--tttcttcatcttcttccttcca 24494212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 26406391 - 26406427
Alignment:
Q  92 caacacctaattttttccccctttcttcatcttcttc 128  Q
    ||||||||||||||||| || ||||||||||||||||    
T  26406391 caacacctaattttttctccatttcttcatcttcttc 26406427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 27408883 - 27409001
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||| |||||||||||| ||||  ||| ||||||| ||||  ||| | ||| | || ||| | |||||||||||||||||||||||  ||||||||    
T  27408883 tttttaatatctaatatttttaatatgttttcgaccattcgattgcaggtctattatgtaccaccctgaaccaccaacacctaatttttt--ccctttct 27408980  T
Q  118 tcatcttcttccttccaccac 138  Q
    | |||||||||||||||||||    
T  27408981 ttatcttcttccttccaccac 27409001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 28103482 - 28103366
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| || ||||||| |||||||||  |||||| ||||  | | ||||||||||||||||  ||||||||||| ||||||||||  |||   ||    
T  28103482 tttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtataacacactcaaccaccaacatctaatttttt-tcccaagct 28103384  T
Q  118 tcatcttcttccttccac 135  Q
    ||||||||||||||||||    
T  28103383 tcatcttcttccttccac 28103366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 52659031 - 52659150
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||  ||||||||| |||||||||  |||||| ||||  ||| |||||||| | ||||| |||||||||||| ||||||||||  |||   ||    
T  52659031 tttttaatgttaaatatttttgatattgtttcaaccattcgattgcaggtccattgtacaccacactgaaccaccaacatctaatttttt-tcccaagct 52659129  T
Q  118 tcatcttcttccttccaccac 138  Q
    ||||||||||| |||||||||    
T  52659130 tcatcttcttcattccaccac 52659150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 31711212 - 31711327
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||| || ||||||| |||||||||  |||||| ||||  | | |||||||||| |||||  ||||||||||| |||||||||||||     ||    
T  31711212 tttttaatgtttactatttttgatattgtttcaaccattcgattgcaagtccattgtataccacactcaaccaccaacatctaattttttcccaag--ct 31711309  T
Q  118 tcatcttcttccttccac 135  Q
    ||||||||||||||||||    
T  31711310 tcatcttcttccttccac 31711327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 43895613 - 43895495
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||||||||| || |  |||| ||||||  |||  | ||| ||||||||  |||  |||||| ||||||| ||||||| |||  |||||    
T  43895613 tttttaatgtctaatatttttgatgtaattttaaccattcaattgcatgactattgtatacaacaatgaaccatcaacaccaaatttttaccc--tttct 43895516  T
Q  118 tcatcttcttccttccaccac 138  Q
     ||||||||||||||||||||    
T  43895515 ccatcttcttccttccaccac 43895495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 8682659 - 8682613
Alignment:
Q  85 gaaccaccaacacctaattttttccccctttcttcatcttcttcctt 131  Q
    ||||||||||||| |||||| |||  |||||||||||||||||||||    
T  8682659 gaaccaccaacacttaatttattctacctttcttcatcttcttcctt 8682613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 2292340 - 2292384
Alignment:
Q  88 ccaccaacacctaattttttccccctttcttcatcttcttccttc 132  Q
    |||||||||| |||||||||  |||||||||||||||||| ||||    
T  2292340 ccaccaacacttaattttttttccctttcttcatcttctttcttc 2292384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 24811 - 24693
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    |||||||||||||||||||||||| |  |||| ||||||  |||  | | | ||||||||  |||  |||||||||||||| |||||||||||  |||||    
T  24811 tttttaatgtctaatattttttatgtgattttaaccattcaattgcatgtctattgtatacaacaatgaaccaccaacaccaaattttttccc--tttct 24714  T
Q  118 tcatcttcttccttccaccac 138  Q
     ||||||||||||||||||||    
T  24713 ccatcttcttccttccaccac 24693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 11826 - 11944
Alignment:
Q  18 tttttaatgtctaatattttttatattgttttgaccatttgattataggaccattgtataacacacagaaccaccaacacctaattttttccccctttct 117  Q
    ||||||||||||||||||||| || |  |||| |||||| ||||  | |   ||||||||  |||  |||||||||||||| || ||||||||  |||||    
T  11826 tttttaatgtctaatatttttgatgtgattttaaccattcgattgcatgtttattgtatacaacaatgaaccaccaacaccaaaatttttccc--tttct 11923  T
Q  118 tcatcttcttccttccaccac 138  Q
     ||||||||||||||||||||    
T  11924 ccatcttcttccttccaccac 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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