View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9621_low_55 (Length: 213)
Name: NF9621_low_55
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 37757264 - 37757083
Alignment:
| Q |
20 |
acggttagacagagggtaattacaaaactgtcatacatctttactgccatggctagaatttctctatactcttcatgaaatgatataactgtttaattca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37757264 |
acggttagacagaggggaattacaaaactgtcatacatctttactgccatggctagaatttctctatactcttcatgaaataatataactgtttaattca |
37757165 |
T |
|
| Q |
120 |
atggatttttaaattttggaactgaagccaagcatttaactggtccatacgtgacctaattcttcttattaatttgtgatgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757164 |
atggatttttaaattttggaactgaagccaagcatttaactggtccatacgtgacctaattcttcttattaatttgtgatgt |
37757083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University