View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9621_low_56 (Length: 212)

Name: NF9621_low_56
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9621_low_56
NF9621_low_56
[»] chr3 (6 HSPs)
chr3 (1-203)||(41883251-41883453)
chr3 (175-212)||(48160899-48160936)
chr3 (177-212)||(6041880-6041915)
chr3 (177-212)||(37217087-37217122)
chr3 (179-212)||(3456062-3456095)
chr3 (181-209)||(37522053-37522081)
[»] chr7 (6 HSPs)
chr7 (174-212)||(24394965-24395003)
chr7 (175-212)||(20010131-20010168)
chr7 (176-212)||(4974769-4974805)
chr7 (180-212)||(3961978-3962010)
chr7 (179-211)||(34482833-34482865)
chr7 (180-212)||(48880961-48880993)
[»] chr8 (4 HSPs)
chr8 (178-212)||(32393855-32393889)
chr8 (176-212)||(1645999-1646035)
chr8 (176-212)||(32064740-32064776)
chr8 (176-212)||(34665377-34665413)
[»] scaffold0096 (1 HSPs)
scaffold0096 (175-212)||(41005-41042)
[»] chr6 (2 HSPs)
chr6 (179-212)||(17176055-17176088)
chr6 (180-212)||(17705499-17705531)
[»] chr5 (2 HSPs)
chr5 (179-212)||(11361165-11361198)
chr5 (180-212)||(12850800-12850832)
[»] chr4 (3 HSPs)
chr4 (179-212)||(2624835-2624868)
chr4 (179-212)||(22199259-22199292)
chr4 (179-212)||(49387922-49387955)
[»] chr2 (2 HSPs)
chr2 (179-212)||(21936079-21936112)
chr2 (176-212)||(9293610-9293646)
[»] chr1 (2 HSPs)
chr1 (176-209)||(9910330-9910363)
chr1 (180-212)||(40214987-40215019)
[»] scaffold0178 (1 HSPs)
scaffold0178 (180-212)||(11620-11652)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 41883453 - 41883251
Alignment:
Q  1 taccttcagaagtaaaaattagtcactcaatttgctagcgtcaatgaactgcattatggtattgggttcactgtttgaaaggcaggcatagaacgtgtaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41883453 taccttcagaagtaaaaattagtcgctcaatttgctagcgtcaatgaactgcattatggtattgggttcactgtttgaaaggcaggcatagaacgtgtaa 41883354  T
Q  101 ctagaaagttggcttttacgtcatgcacctttgcactggaaatgtgcatctcaacaactaacaatacccgacggaaaaatgagcaatactatatatcaag 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41883353 ctagaaagctggcttttacgtcatgcacctttgcactggaaatgtgcatctcaacaactaacaatacccgacggaaaaatgagcaatgctatatatcaag 41883254  T
Q  201 aaa 203  Q
    |||    
T  41883253 aaa 41883251  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 48160899 - 48160936
Alignment:
Q  175 aaaaatgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  48160899 aaaaatgagcaatgctatatatcaagaaagattttatc 48160936  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 6041880 - 6041915
Alignment:
Q  177 aaatgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6041880 aaatgagcaatgctatatatcaagaaagattttatc 6041915  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 37217122 - 37217087
Alignment:
Q  177 aaatgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37217122 aaatgagcaatgctatatatcaagaaagattttatc 37217087  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 3456062 - 3456095
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  3456062 atgagcaatgctatatatcaagaaagattttatc 3456095  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 37522053 - 37522081
Alignment:
Q  181 gagcaatactatatatcaagaaagatttt 209  Q
    |||||||||||||||||||||||||||||    
T  37522053 gagcaatactatatatcaagaaagatttt 37522081  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 24394965 - 24395003
Alignment:
Q  174 gaaaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24394965 gaaaaatgagcaatgctatatatcaagaaagattttatc 24395003  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 20010168 - 20010131
Alignment:
Q  175 aaaaatgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20010168 aaaaatgagcaatgctatatatcaagaaagattttatc 20010131  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 4974805 - 4974769
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4974805 aaaatgagcaatgctatatatcaagaaagattttatc 4974769  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 3961978 - 3962010
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  3961978 tgagcaatgctatatatcaagaaagattttatc 3962010  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 34482833 - 34482865
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttat 211  Q
    ||||||||| |||||||||||||||||||||||    
T  34482833 atgagcaatgctatatatcaagaaagattttat 34482865  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 48880993 - 48880961
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  48880993 tgagcaatgctatatatcaagaaagattttatc 48880961  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 32393855 - 32393889
Alignment:
Q  178 aatgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  32393855 aatgagcaatgctatatatcaagaaagattttatc 32393889  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 1646035 - 1645999
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  1646035 aaaaagagcaatgctatatatcaagaaagattttatc 1645999  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 32064740 - 32064776
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  32064740 aaaaagagcaatgctatatatcaagaaagattttatc 32064776  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 34665377 - 34665413
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  34665377 aaaacgagcaatgctatatatcaagaaagattttatc 34665413  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 41005 - 41042
Alignment:
Q  175 aaaaatgagcaatactatatatcaagaaagattttatc 212  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  41005 aaaaaagagcaatgctatatatcaagaaagattttatc 41042  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 17176088 - 17176055
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  17176088 atgagcaatgctatatatcaagaaagattttatc 17176055  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 17705531 - 17705499
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  17705531 tgagcaatgctatatatcaagaaagattttatc 17705499  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 11361198 - 11361165
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  11361198 atgagcaatgctatatatcaagaaagattttatc 11361165  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 12850800 - 12850832
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  12850800 tgagcaatgctatatatcaagaaagattttatc 12850832  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 2624835 - 2624868
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  2624835 atgagcaatgctatatatcaagaaagattttatc 2624868  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 22199259 - 22199292
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  22199259 atgagcaatgctatatatcaagaaagattttatc 22199292  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 49387955 - 49387922
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  49387955 atgagcaatgctatatatcaagaaagattttatc 49387922  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 21936079 - 21936112
Alignment:
Q  179 atgagcaatactatatatcaagaaagattttatc 212  Q
    ||||||||| ||||||||||||||||||||||||    
T  21936079 atgagcaatgctatatatcaagaaagattttatc 21936112  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 9293646 - 9293610
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagattttatc 212  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  9293646 aaaaagagcaatgctatatatcaagaaagattttatc 9293610  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 9910363 - 9910330
Alignment:
Q  176 aaaatgagcaatactatatatcaagaaagatttt 209  Q
    |||||||||||| |||||||||||||||||||||    
T  9910363 aaaatgagcaatgctatatatcaagaaagatttt 9910330  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 40214987 - 40215019
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  40214987 tgagcaatgctatatatcaagaaagattttatc 40215019  T

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Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 11620 - 11652
Alignment:
Q  180 tgagcaatactatatatcaagaaagattttatc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  11620 tgagcaatgctatatatcaagaaagattttatc 11652  T

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