View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9621_low_7 (Length: 457)
Name: NF9621_low_7
Description: NF9621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9621_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 452
Target Start/End: Original strand, 35420323 - 35420754
Alignment:
| Q |
21 |
ctccgtagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcaatgaaatcgg |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35420323 |
ctccttagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcatcgaaatcgg |
35420422 |
T |
|
| Q |
121 |
atgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420423 |
atgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctca |
35420522 |
T |
|
| Q |
221 |
tatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagta |
320 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420523 |
tatttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagta |
35420622 |
T |
|
| Q |
321 |
gagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420623 |
gagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgta |
35420722 |
T |
|
| Q |
421 |
aggtgtggcaggtctgtgtcgtgctctctgct |
452 |
Q |
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| T |
35420723 |
aggtgtggcaggtctgtgtcgtgctttctgct |
35420754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 452
Target Start/End: Original strand, 35429462 - 35429893
Alignment:
| Q |
21 |
ctccgtagagttactacactcgttgttgaagaagatggattagatcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcaatgaaatcgg |
120 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
35429462 |
ctccgtagagttaccacactcgaggttgaagaagatggattagatcaatactatcaatgttctatttctcaacaaaatgttggtttgtcattgaaatcgg |
35429561 |
T |
|
| Q |
121 |
atgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctca |
220 |
Q |
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|| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35429562 |
ttgatgaaactatttcaaattccaacgataaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctca |
35429661 |
T |
|
| Q |
221 |
tatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagta |
320 |
Q |
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| T |
35429662 |
tgtttttcataaagagtgtattgcccagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagta |
35429761 |
T |
|
| Q |
321 |
gagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429762 |
gagaagggacaatatgcatgcattaattgaagtcccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgta |
35429861 |
T |
|
| Q |
421 |
aggtgtggcaggtctgtgtcgtgctctctgct |
452 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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|
| T |
35429862 |
aggtgtggcaggtctgtgtcgtgctttctgct |
35429893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 35423499 - 35423543
Alignment:
| Q |
198 |
ctctttcatacaaaatgctctcatatttttcataaagagtgtatt |
242 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 42974033 - 42974125
Alignment:
| Q |
151 |
aatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattg |
243 |
Q |
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||||||| ||||||||||||||||| || | |||||| |||||||||| ||| |||||| || ||| |||| |||||||||||||||| |
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| T |
42974033 |
aatgttcgatttgtttggaggagttttgtaaaggatcgcattcagaactctactatagaaaatgttcgcatgttttccataaagagtgtattg |
42974125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 336
Target Start/End: Original strand, 25079673 - 25079888
Alignment:
| Q |
119 |
ggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctct |
218 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| | || | ||| | | ||||||| || ||||| |||||| |
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| T |
25079673 |
ggatgttgaaactacttcaaattctaccgatcaatgttcaatttgtttgatggagtttcttaatggatcatatttagaactcctt-ttacaagatgctc- |
25079770 |
T |
|
| Q |
219 |
catatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgag |
318 |
Q |
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|||||||| ||||||||||| ||||| | | ||| ||| ||||||||||| |||| || | | |||||| ||| ||| |||||| ||||||| |||| |
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| T |
25079771 |
catattttccataaagagtgcattgccaaatggatatattgatgcatcaattgttcatcttcttgttcttgaccattgtatcgacatgagataaagtgaa |
25079870 |
T |
|
| Q |
319 |
tagagaagggacaatatg |
336 |
Q |
| |
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|||||| |||| ||||| |
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|
| T |
25079871 |
aagagaaaggactatatg |
25079888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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