View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9622_high_3 (Length: 424)
Name: NF9622_high_3
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 41424844 - 41425245
Alignment:
| Q |
8 |
gtagttattaattctgatgaacttgatgataaattctaggcatgtacacaatgtggcttttgagaaatcagatttgttcttcatctgcatgctaaaacca |
107 |
Q |
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| T |
41424844 |
gtagttattaattctgatgaacttgatgataaattctaggcatgtacacaatgtggcttttgagaaatcagatttgttcttcatctgcatgctaaaacca |
41424943 |
T |
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| Q |
108 |
ctatcatatacgatcactgtggatgatcttgaaattgatgcagcaaaatggatgccactcgttgagtttgtagagcaaccattaatacaagaagattcca |
207 |
Q |
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| T |
41424944 |
ctatcatctacgatcactgtggatgatcttgaaattgatgcagcaaaatggatgccactggttgagtttgtagagcaaccattaatacaagaagattcca |
41425043 |
T |
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| Q |
208 |
tgttcaagaagattgtagatatctttatcgctcgtcttgggaaacgttattgtggactatcaactcatcaagtagtttccaagtttgatggaaaaattac |
307 |
Q |
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| T |
41425044 |
tgttcaagaagattgtagatatctttatcgctcgtcttgggaaacgttattgtggactatcaactcatcaagtagtttccaagtttgatggaaaaattac |
41425143 |
T |
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| Q |
308 |
ttccctatactacaatgtctttgacaatgatgattccaactgtgttggaaaataatttaggctctaaaaactgagctaaccactacattactatagatgt |
407 |
Q |
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| T |
41425144 |
ttccctatactacaatgtctttgacaatgatgattccaactgtgttggaaaataatttaggctctaaaaactgagctaaccactacattactatagatgt |
41425243 |
T |
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| Q |
408 |
cc |
409 |
Q |
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| T |
41425244 |
cc |
41425245 |
T |
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