View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9622_high_5 (Length: 235)
Name: NF9622_high_5
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 18218283 - 18218490
Alignment:
| Q |
13 |
agcacagacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcactac |
112 |
Q |
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| T |
18218283 |
agcacacacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcactac |
18218382 |
T |
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| Q |
113 |
tattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtta |
212 |
Q |
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| T |
18218383 |
tattataaacttcagcagcttctacctagttacgagaaaaaaatcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtta |
18218482 |
T |
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| Q |
213 |
gaacatta |
220 |
Q |
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|||||||| |
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| T |
18218483 |
gaacatta |
18218490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 43010533 - 43010660
Alignment:
| Q |
92 |
tgaaaatattatcttcactactattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctaga |
191 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| | |
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| T |
43010533 |
tgaaaatattatcttcactac-attataaactttagcagcttctacctagttacgagaaaaaaatcctacctgattgcacaaattttgcacctttctaaa |
43010631 |
T |
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| Q |
192 |
atctccacttggaggatgttagaacatta |
220 |
Q |
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| T |
43010632 |
atctccacttggaggatgttagaacatta |
43010660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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