View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9622_low_10 (Length: 386)
Name: NF9622_low_10
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 9967767 - 9968136
Alignment:
| Q |
17 |
catcttctactgcatcaatcactatgctgttatcaacagctccttgtgcttcaacatccccagattcaagcccctcagcagttgcacaactatcttgcac |
116 |
Q |
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| T |
9967767 |
catcttcaactgcatcaatcactatgctgttatcaacagctccttgtgcttcaacatccccagattcaagcccctcggcagttgcacaactatcttgcac |
9967866 |
T |
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| Q |
117 |
aactttattcaactgagtttcttctttcttctcagtagaaactacagtatcatcttgtgaatcttctatagaatcggacaaagaatcgtcagacttctct |
216 |
Q |
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| T |
9967867 |
aactttattcaactgagtttcttctttcttctcagtagaaactacagtatcatcttgtgaatcttctatagaatcggacaaagaatcgtcagacttctct |
9967966 |
T |
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| Q |
217 |
ttaaacacgttattcgcctcctttggggttggatcgatgtttctatgagcttcaatatcttcctcttcatgttttccaacatcatgttcctgactaacag |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9967967 |
ttaaacacgttattcgcctcttttggggttggatcgatgtttctatgagcttcaatatcttcctcttcatgttttccaacatcatgttcctgactaacag |
9968066 |
T |
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| Q |
317 |
aaatctcattttgaggattatagacctgcaacttggagattgtcccaggaggagccaaggctacttcctt |
386 |
Q |
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| T |
9968067 |
aaatctcattttgaggattatagacctgcaacttggagattgtcccaggaggagccaaggctacttcctt |
9968136 |
T |
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