View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9622_low_13 (Length: 257)
Name: NF9622_low_13
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_low_13 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 3106 - 2952
Alignment:
| Q |
88 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatggtagcaacattttggttcataggctttctttaaagt |
187 |
Q |
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| T |
3106 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttggttcataggctttctttaaagt |
3007 |
T |
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| Q |
188 |
gtaacccgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaatt |
240 |
Q |
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| T |
3006 |
ataactcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaatt |
2952 |
T |
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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 6939762 - 6939870
Alignment:
| Q |
52 |
tttgaaattgagaccatattgtcaacaacttgaaacaaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatg |
151 |
Q |
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| T |
6939762 |
tttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatg |
6939861 |
T |
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| Q |
152 |
gtagcaaca |
160 |
Q |
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| T |
6939862 |
gtagcaaca |
6939870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 6942937 - 6943045
Alignment:
| Q |
52 |
tttgaaattgagaccatattgtcaacaacttgaaacaaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatg |
151 |
Q |
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| T |
6942937 |
tttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatg |
6943036 |
T |
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| Q |
152 |
gtagcaaca |
160 |
Q |
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| T |
6943037 |
gtagcaaca |
6943045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 6943078 - 6943149
Alignment:
| Q |
171 |
taggctttctttaaagtgtaacccgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaatt |
240 |
Q |
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| T |
6943078 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaatt |
6943149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 6939903 - 6939974
Alignment:
| Q |
171 |
taggctttctttaaagtgtaacccgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaatt |
240 |
Q |
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| T |
6939903 |
taggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaatt |
6939974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 6787765 - 6787696
Alignment:
| Q |
52 |
tttgaaattgagaccatattgtcaacaacttgaaaca--aaaatggcatctttccataagcatcacagta |
119 |
Q |
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| T |
6787765 |
tttgcaattgaaaccatattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
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