View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9622_low_5 (Length: 429)
Name: NF9622_low_5
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3430458 - 3430726
Alignment:
| Q |
18 |
aaaggtatgggctttggtgaagaagataaaatattaatagtttatttggaatggataaatgggagatgagaagagaaataagaatggtggttatgaatta |
117 |
Q |
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| T |
3430458 |
aaaggtatgggctttggtgaagaagataaaatattaatagtttatttggaatggataaatgggagatgagaagagaaataagaatggtggttatgaatta |
3430557 |
T |
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| Q |
118 |
tgatgatattgagaatggtagcaactagtcaagtcccactcctcttaattcttcttatgtaagaataacgatgttatagaaccaagtatgaaaggaataa |
217 |
Q |
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| T |
3430558 |
tgatgatattgagaatggtagcaactagtcaagtcccactcctcttaa---ttcttatgtaagaataacgatgttatagaaccaagtatgaaaggaataa |
3430654 |
T |
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| Q |
218 |
caaatattttttaatacatagataatgatgnnnnnnnatataggatgtccttatgcggattacaacatacac |
289 |
Q |
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| T |
3430655 |
caaatattttttaatacatagataatgatgtttttttatataggatgtccttatgcggattacaacatacac |
3430726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 3430791 - 3430862
Alignment:
| Q |
351 |
tgacgtttttacaatttaaaactctaattctgactttattggtagtaaaaacacttct--tactagtataat |
420 |
Q |
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| T |
3430791 |
tgacgtttttacaatttaaaactctaattctgactttattggtagtaaaaacacttcttatactagtataat |
3430862 |
T |
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