View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9622_low_8 (Length: 412)
Name: NF9622_low_8
Description: NF9622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9622_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 6989862 - 6990257
Alignment:
| Q |
1 |
gatataaatttgtccaaatcaattctatgaatctcgaaatgattttgtatttttcaaacgtggaaccgaaaccaaacatacacaaagacatgtccgaaac |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6989862 |
gatataaacgtgtcaaaatcaattctatgaatctcgaaatgattttgtatttttcaaacgtggaaccgaaaccaaacatacacaaagacatgtccgaaac |
6989961 |
T |
|
| Q |
101 |
aaaatatatcaacacaagtacataacatcaatcaatacacatgtataaaaattaatggtacattaagcnnnnnnnnngtcaacttacttgcatgtaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6989962 |
aaaatatatcaacacaagtacacaacatcaatcaatacacatgtataaaaattaatggtacattaagcaaaaaaaa-gtcaacttacttgcatgtaaaat |
6990060 |
T |
|
| Q |
201 |
caatatagattattattaaggaaacattacagatataataccatattaattaatgaatgagatggaaataacgttgcatgcatgcatgcacgtataaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6990061 |
caatatagattattattaaggaaacattacagatataataccatattaattaatgaatgagatggaaataacgttgcatgcatgcatgcacgtataaaga |
6990160 |
T |
|
| Q |
301 |
aatgaactcaaaatgtttaagaaaaggtggtattacctcgagaaagaaggctgtggtggttctcgttgttcatcgctcatgatggcgatggaaaaag |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6990161 |
aatgaactcaaaatgtttaagaaaaggtggtattacctcgagaaagaaggctgtggtggttctcgttgttcatcgctcatgatggcgatggaaaaag |
6990257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University