View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_high_22 (Length: 254)
Name: NF9623_high_22
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44109434 - 44109195
Alignment:
| Q |
1 |
acagatccacattgatgttttgcattctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaatt |
100 |
Q |
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| T |
44109434 |
acagatccacattgatgttttgcattctgtacagttattacaaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaatt |
44109335 |
T |
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| Q |
101 |
atttcttgagatgctgacagttattaccaacctccaactattacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctctt |
200 |
Q |
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| T |
44109334 |
atttcttgagatgcagacagttattaccaacctccaactattacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctctt |
44109235 |
T |
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| Q |
201 |
tctgtcggaaaatggtttggcaaaacatttagtatctgtg |
240 |
Q |
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| T |
44109234 |
tctgttggaaaatggtttggcaaaacatttagtatctgtg |
44109195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
24 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
93 |
Q |
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| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 44146781 - 44146716
Alignment:
| Q |
175 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtg |
240 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtg |
44146716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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