View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_high_29 (Length: 240)
Name: NF9623_high_29
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 49634087 - 49633888
Alignment:
| Q |
14 |
cacagattaaagacacaaaatcctcaccaaccacaccaatcaaaccctatcttattattactattattacctatacatatatcacaccaaaatctacgac |
113 |
Q |
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| T |
49634087 |
cacagattaaagacacaaaatcctcaccaa---------tcaaaccctatcttattattactattattacctatacatatatcacaccaaaatctacgac |
49633997 |
T |
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| Q |
114 |
gtgtccctaacatggaaatagttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaagtcctttggaagagaaatgaggtaca |
213 |
Q |
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| T |
49633996 |
gtgtccctaacatggaaatagttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaagtcctttggaagagaaatgaggtaca |
49633897 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 14418665 - 14418719
Alignment:
| Q |
133 |
agttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaa |
187 |
Q |
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| T |
14418665 |
agttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaa |
14418719 |
T |
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