View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_high_31 (Length: 239)
Name: NF9623_high_31
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43532656 - 43532878
Alignment:
| Q |
1 |
acggaagagttaaaacctttaacgaatgtaaatgtctcaatggaaagagtgaaaacaaatacctcagctataccatgtagcatctggactattctcaagg |
100 |
Q |
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| T |
43532656 |
acggaagagttaaaacctttaatgaatgtaaatgtctcaatggaaagagtgaaaacaaatacctcagctatatcatgtagcatctggactattctcaagg |
43532755 |
T |
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| Q |
101 |
ctgttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattgattataatctcatttccaatacaaactctcttcctctctccacc |
200 |
Q |
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| T |
43532756 |
ctgttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattgattataatctcatttccaatacaaactctcttcctctctccacc |
43532855 |
T |
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| Q |
201 |
agatactcctcggacaaaggaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43532856 |
agatactcctcggacaaaggaac |
43532878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 24126763 - 24126598
Alignment:
| Q |
58 |
aatacctcagctataccatgtagcatctggactattctcaaggctgttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattga |
157 |
Q |
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| T |
24126763 |
aatacctctgctatgtcttgcagcatctgaacgatcttcaaggcggttgtcgaatccaaaccagatgttggttcatcaagaaacagaatggaaggattga |
24126664 |
T |
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| Q |
158 |
ttataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaac |
223 |
Q |
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| T |
24126663 |
ttataatctcattaccaatacaaactctcttcctctctccaccggatactccacgaacaaatgaac |
24126598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 24144944 - 24144842
Alignment:
| Q |
103 |
gttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattgattataatctcatttccaatacaaactctcttcctctctccaccag |
202 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
24144944 |
gttgttgaatccaaaccagatgttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccag |
24144845 |
T |
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| Q |
203 |
ata |
205 |
Q |
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||| |
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| T |
24144844 |
ata |
24144842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 33718680 - 33718638
Alignment:
| Q |
100 |
gctgttgtagaatccaaaccagatgttggttcatcaagaaaca |
142 |
Q |
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| T |
33718680 |
gctgtagtagaatccaaaccagaagttggttcatcaagaaaca |
33718638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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