View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_high_35 (Length: 223)
Name: NF9623_high_35
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 30952173 - 30951977
Alignment:
| Q |
16 |
actatatagtcactaacaatatccaatttaaaaattaactgtaattgtaccagcctatacagatcggatagtgagttgac----gggcactgaaggatac |
111 |
Q |
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| T |
30952173 |
actatatagtcactaacaatatccaatttaaaaattaactgtaattgtaccagcctatacagatcggatagtgagttgactgacgggcactgaaggatac |
30952074 |
T |
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| Q |
112 |
tatgcggaagatttgggattaccactaatttactagtatctttctacggagacacttgatgattgcaacaataaggtacatagttgactttgtttat |
208 |
Q |
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| T |
30952073 |
tatgcggaagatttgggattaccactaatttactagtatctttctacggagacacttgatgattgcaacaataaggtacatagttgactttgtttat |
30951977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 31016473 - 31016303
Alignment:
| Q |
16 |
actatatagtcactaacaatatccaatttaaaaattaactgtaattgtaccagcctat----acagatcggatagtgagttgacgggcactgaaggatac |
111 |
Q |
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| T |
31016473 |
actatatactcactagaaatatccaatttaaaaataaatcgtcattgtatcagcctatgcatacagctcggttagtgagttga-gggcaccaaacgattt |
31016375 |
T |
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| Q |
112 |
tatgcggaagatttgggattaccactaatttactagtatctttctacggagacacttgatgattgcaacaat |
183 |
Q |
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| T |
31016374 |
tatgccgaagatatcgaattaccactaatttactagtatttttttatggagacacttgatgattgcaacaat |
31016303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 23984298 - 23984342
Alignment:
| Q |
139 |
atttactagtatctttctacggagacacttgatgattgcaacaat |
183 |
Q |
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|||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
23984298 |
atttacaagtatctttctatggaggtacttgatgattgcaacaat |
23984342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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