View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_high_7 (Length: 482)
Name: NF9623_high_7
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 47688310 - 47687856
Alignment:
| Q |
20 |
ggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaaggttttcgccgccatca |
119 |
Q |
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| T |
47688310 |
ggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaaggttttcgccgccatca |
47688211 |
T |
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| Q |
120 |
ccaccgccgcctcgaccttgatcagatgaagaattcatcccaatctcttgttgcttgccactacctccaataagacttctgtgcaaaccctctcctccac |
219 |
Q |
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| T |
47688210 |
ccaccgccgcctcgaccttgatcagatgaagaactcatcccaatctcttgttgcttgccactacctccaataagacttctgtgcaaaccctctcctccac |
47688111 |
T |
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| Q |
220 |
cgcggatgaagtcaggaaacccaccaccagaacccaatgttgagctactacctcctcccacgttcatattgctacaggcttcgctttgcatcatgtgtag |
319 |
Q |
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| T |
47688110 |
cgcggatgaagtcaggaaacccaccaccagaacccaatgttgagctactacttcctcccacgttcatattgctacaggcttcgctttgcatcatgtgtag |
47688011 |
T |
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| Q |
320 |
tcctgaagttccaccgcctccaagttggtgctgttgaagggctgagtaaggttgctgctgctgttgctgtgcaaataaaagggaggaacgtgcagccatt |
419 |
Q |
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| T |
47688010 |
tcctgaagttccaccgcctccaagttggtgctgttgaagggctgagtaaggttgctgctgctgttgctgtgcaaataaaagggaggaacgtgcagccatt |
47687911 |
T |
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| Q |
420 |
agttgttgttgttgtgtcatctgctgagcctgcatgtagtgtgctcctctctgct |
474 |
Q |
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| T |
47687910 |
agttgttgttgttgtgtcatctgctgagcctgcatgtagtgtgctcctccctgct |
47687856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 35836306 - 35836358
Alignment:
| Q |
70 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
122 |
Q |
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| T |
35836306 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 35836602 - 35836645
Alignment:
| Q |
402 |
gaggaacgtgcagccattagttgttgttgttgtgtcatctgctgagc |
448 |
Q |
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| T |
35836602 |
gaggaacgtgcagccatta---attgttgttgtgtcatctgctgagc |
35836645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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