View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9623_low_10 (Length: 573)
Name: NF9623_low_10
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 7129484 - 7128933
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7129484 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
7129385 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7129384 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7129285 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| | ||||| |||||||| |||||||| | ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7129284 |
agtaagagaattgaggcccttaattttgataagagagtctttaattttacaaatcgcgcacctgagcaacgagttttgagagaaagagaaactcactcct |
7129185 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7129184 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagag---ttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
7129088 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7129087 |
aattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaa |
7128988 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatcatag |
555 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
7128987 |
tgggtttgtgtttctgatgattttgatgtaaaaggtattgctgcaaaaatcatag |
7128933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 7481654 - 7482189
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
7481654 |
accatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgacaagt |
7481753 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481754 |
catgaccagtaacaagaaggctaaaaagttttacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7481853 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7481854 |
agtaagagaattgaggctcttaatgttggtcagagaatttttaattttacaaatcgtacacctgagcaacgagttttgaaacaacgagaaactcactcct |
7481953 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481954 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaagagttgatagag---ttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
7482050 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
7482051 |
aattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagttgaaaaag |
7482150 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttatt |
539 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||| |
|
|
| T |
7482151 |
tgggtttgtgtttctgatgattttgatgtaaaaggtatt |
7482189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 7494056 - 7494606
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
7494056 |
accatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgacaggt |
7494155 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494156 |
gatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7494255 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | ||||| |||||||| ||||||||| | ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7494256 |
agtaagagaattgaggcccttaatgttgctaagagagtctttaattttacaaatcgtgcacctgagcaacgagttttgagagaaagagaaactcactcct |
7494355 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494356 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagag---ttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
7494452 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
7494453 |
agttatttctataattggaatcggaggactggggaagactgcgcttgctcaatttgtatacaatgacaagaaagtgaaacaacattttgagtttaaaaaa |
7494552 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatcata |
554 |
Q |
| |
|
||||| ||| |||| || |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
7494553 |
tgggtttgtgtttctgaagattttaatgtaaaagttattgctgcaaagatcata |
7494606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 7519723 - 7520271
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7519723 |
accatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
7519822 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7519823 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaaggaactt |
7519922 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| | ||||| ||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7519923 |
agtaagagaattgaggcccttaatgttggtaaaagaagttttaactttacaaatcgcactcctgagcaacgagttttgaaacaacgagaaactcactcct |
7520022 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7520023 |
ttattcgtgcagaagaagttattggaagagaggaggagaagaaagagttgatagag---ttgttgtttaacactagcaacaatgtgacagagaatgtttc |
7520119 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
7520120 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaa |
7520219 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatca |
552 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
7520220 |
tgggtttgtgtttctgatgattttgatgtaaaaggtattgctgcaaagatca |
7520271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 7722758 - 7722207
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7722758 |
accatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagt |
7722659 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7722658 |
gatgaccagtaacaagaaggctaaaaagttttgcatcttcttctcatcatccaaccaacttctcttttcatacaaaatggttcagaaaattaaggaactt |
7722559 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| | ||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
7722558 |
agtaagagaattgaggcccttaatattgataagagaagttttaattttacaaatcgcacacctgagcaacgagttttgagacaaagagaaactcattctt |
7722459 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7722458 |
ttattcgcgaggaagaagttattggaagagataaggagaagaaagagctgatagag---ttgttgtttaacaccggcaacaatttgaaagagaatgtttc |
7722362 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7722361 |
agttatttctataattggaattggaggactcggaaagactgcgcttgctcaacttgtatacggcgacaaagaagtgcaacaacattttgagttgaaaaaa |
7722262 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatcatag |
555 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
7722261 |
tgggtttgtgtttctgatgattttgatgtaaaaggtattgcttcaaagatcatag |
7722207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 7714471 - 7713921
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||| || || |||| ||||| |||||| ||||| ||||||| |
|
|
| T |
7714471 |
accatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgacaagt |
7714372 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7714371 |
gatgaccaatcacaagaaagctaaaaaggtttgcatcttcttctcatcatccaaccaacttctcttttctttcaaaatggttcagaaaattaaggaacta |
7714272 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| |||||||||||| | | ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714271 |
agtaagagaattgaggaccttaatgctaataagagaagttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaagagaaactcactcct |
7714172 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7714171 |
ttattcttgaggaagaagttattggaagagatgaggagaagaaagagttgatagag---ttgttgtttaacaccggcaacgatgtgaaggagaatgtttc |
7714075 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagac-tgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaa |
499 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7714074 |
agttatttctataattggaatcggaggacttggaaagacgtgcacttgctcaacttttatatggtgacaaagaagtgaaacaacattttgagttgaaaaa |
7713975 |
T |
|
| Q |
500 |
atgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatcat |
553 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
7713974 |
atgggtttgtgtttctgatgattttgatgtaaaagatattgctgcaaagatcat |
7713921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 7527773 - 7528323
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||||||||| || ||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
7527773 |
accatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgacaagt |
7527872 |
T |
|
| Q |
101 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7527873 |
gatgaccaatcacaagaaagctaaaaaggtccgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7527972 |
T |
|
| Q |
201 |
agtaagagaattaaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcct |
300 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | ||||| |||||||| |||||||| | ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7527973 |
agtaagagaattgaggcccttaatgttgataagagagtctttaattttacaaatcgcgcacctgagcaacgagttttgagagaaagagaaactcactcct |
7528072 |
T |
|
| Q |
301 |
ttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttc |
400 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7528073 |
ttattagtgcagaagatgttattggaagagatgaggaaaagaaagagttgatagag---ttgttgtttaacactagcaacaatgtgaaagagaatgtttc |
7528169 |
T |
|
| Q |
401 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaaaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
7528170 |
agttatttctataattggaattggaggacttggaaagactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaa |
7528269 |
T |
|
| Q |
501 |
tgggtctgtatttcggatgattttgatgtaaaagttattattgcaaagatcata |
554 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
7528270 |
tgggtttgtgtttctgatgattttgatgtaaaaggtattgctgcaaagatcata |
7528323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 36 - 383
Target Start/End: Original strand, 7506355 - 7506699
Alignment:
| Q |
36 |
gatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatcacaagaaggctaaaaaggttcgca |
135 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || |
|
|
| T |
7506355 |
gatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcaca |
7506454 |
T |
|
| Q |
136 |
tcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattaaggaccttaatgttggtcagag |
235 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
7506455 |
tcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttggtaagag |
7506554 |
T |
|
| Q |
236 |
aagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcctttattcgtgaggaagaagttattggaagagatgag |
335 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
7506555 |
aatttttaattttacaaatcgcactcctgagcaacgagttttgaaacaaagagaaactcactcttttattcgcgaggaataagttattggaagagatgag |
7506654 |
T |
|
| Q |
336 |
gagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaat |
383 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7506655 |
gagaagaaagagttgatagag---ttgttgtttaacaccggcaacaat |
7506699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Complemental strand, 18035241 - 18035190
Alignment:
| Q |
415 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
466 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
18035241 |
ttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
18035190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 16750769 - 16750324
Alignment:
| Q |
13 |
aactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatca |
112 |
Q |
| |
|
|||| ||| |||| |||||||| ||| ||||||||||||| ||||||||||||||||| || || ||||||||| ||| ||||| |||| || | |
|
|
| T |
16750769 |
aactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaaga |
16750670 |
T |
|
| Q |
113 |
caagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| | || |||| ||||||||||||| ||||||| ||| ||||| |
|
|
| T |
16750669 |
caagaaggctaaaaaggttcgcatcttcttatcctcttccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaatt |
16750570 |
T |
|
| Q |
213 |
aaggaccttaatgttggtcagagaagatttaatttcacaaatcgtactcctgagcaacgagttttgaaacaaagagaaactcactcctttattcgtgagg |
312 |
Q |
| |
|
||| ||||| |||| | || || || ||||| || |||| ||||||||| |||||||| ||| || |||| |||||| ||||| |||||||||| |
|
|
| T |
16750569 |
gagggtcttaacgttgataggaaaattttcaattttactaatcacactcctgagaaacgagttatgaggcagagagtaactcattccttcattcgtgagg |
16750470 |
T |
|
| Q |
313 |
aagaagttattggaagagatgaggagaagaaaaagttgatagagtttttgttgtttaacaccggcaacaatgtgaaagagaatgtttcagttatttctat |
412 |
Q |
| |
|
|| |||| || |||||||| || || ||||| | |||||| |||| |||||| ||||| | || | |||| |||| ||||||||||||||||| || |
|
|
| T |
16750469 |
aaaaagtcataggaagagacgacgaaaagaaggatttgataaagttattgttg---aacactgacatcgatgtcaaaggaaatgtttcagttatttccat |
16750373 |
T |
|
| Q |
413 |
aattggaattggaggacttggaaagactgcacttgctcaacttgtataca |
462 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
16750372 |
cattggaattggaggacttggaaagaccgca-ttgctcaacttgtgtaca |
16750324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 4497228 - 4497279
Alignment:
| Q |
415 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
466 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4497228 |
ttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
4497279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 4528479 - 4528530
Alignment:
| Q |
415 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
466 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4528479 |
ttgggattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
4528530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 10184242 - 10184288
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttga |
490 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||||||||||| |
|
|
| T |
10184242 |
cttgctcaacttgtttacaatgataaagaagttcaacaacattttga |
10184288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 10260698 - 10260744
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttga |
490 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||||||||||| |
|
|
| T |
10260698 |
cttgctcaacttgtttacaatgataaagaagttcaacaacattttga |
10260744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 10032003 - 10032055
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaa |
496 |
Q |
| |
|
||||| |||||||| |||||||| | |||||| |||||||||||||| ||||| |
|
|
| T |
10032003 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
10032055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 10126928 - 10126980
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaa |
496 |
Q |
| |
|
||||| |||||||| |||||||| | |||||| |||||||||||||| ||||| |
|
|
| T |
10126928 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
10126980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 10363867 - 10363815
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaa |
496 |
Q |
| |
|
||||| |||||||| |||||||| | |||||| |||||||||||||| ||||| |
|
|
| T |
10363867 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
10363815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 10663526 - 10663578
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaa |
496 |
Q |
| |
|
||||| |||||||| |||||||| | |||||| |||||||||||||| ||||| |
|
|
| T |
10663526 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
10663578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 11769234 - 11769286
Alignment:
| Q |
444 |
cttgctcaacttgtatacaatgacagagaagtgcaacaacattttgagttgaa |
496 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||| ||||||| ||||| |
|
|
| T |
11769234 |
cttgctcaacttgtctacaatgataaagaagttcaacaatattttgatttgaa |
11769286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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