View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9623_low_13 (Length: 525)

Name: NF9623_low_13
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9623_low_13
NF9623_low_13
[»] chr3 (2 HSPs)
chr3 (17-506)||(46360346-46360832)
chr3 (159-206)||(30122036-30122083)
[»] chr4 (2 HSPs)
chr4 (159-206)||(23673437-23673484)
chr4 (159-211)||(52840280-52840332)
[»] chr2 (3 HSPs)
chr2 (159-206)||(41517445-41517492)
chr2 (243-280)||(21738246-21738283)
chr2 (159-208)||(472424-472473)
[»] chr6 (1 HSPs)
chr6 (149-206)||(24252962-24253019)
[»] chr7 (3 HSPs)
chr7 (154-206)||(2399781-2399833)
chr7 (168-213)||(23097575-23097620)
chr7 (249-285)||(41150034-41150070)
[»] chr1 (2 HSPs)
chr1 (459-493)||(5070857-5070891)
chr1 (159-208)||(5700113-5700162)
[»] scaffold1681 (1 HSPs)
scaffold1681 (294-363)||(642-713)
[»] chr5 (1 HSPs)
chr5 (236-280)||(4695128-4695172)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Original strand, 46360346 - 46360832
Alignment:
Q  17 cgcactacctccatctaatttttgcttcgcgggctatgagcaaataaagacaaaatatatcggtggatttaatttatggaaaatgataactattgtctat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  46360346 cgcactacctccatctaatttttgcttcgcgggctatgagcaaataaaggcaaaatatattg-tggatttaatttatggaaaatgataacgattgtctat 46360444  T
Q  117 gagcactttttaagacattaaatagtattttatctgatcatgtttataagcaaaatataactttttaagcatattgaataattaatgtatttaacttttt 216  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  46360445 gagcattttttaagaccttaaatagtattttatctggtcacgtttataagcaaaatataattttttaagcatattgaataattaatatatctaacttttt 46360544  T
Q  217 atgagcaaataaatgtgattggagggagtaagtttttatgaaattttatataatcagtgcattgtgaatatttgtcttttttaaatagtaattacctaat 316  Q
        ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46360545 ----gcttataaatgtgactggagggagtaagtttttatgaaattttatataatcagtgcattgtgaatatttgtcttttttaaatagtaattacctaat 46360640  T
Q  317 ttataatgctta--gagtgtctgagaacactcgttatcaaaacccttaatttattaataattaatcacatgtaaactaattaatgaataaggagttaatt 414  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46360641 ttataatgcttaaagagtgtctgagaacactcgttatcaaaacccttaatctattaataattaatcacatgtaaactaattaatgaataaggagttaatt 46360740  T
Q  415 tgctgcataaatatcattctcttagaatgtctataaactaatgaaaatacatcaatttagtttttaaactatcatgaaagacaaccaatttc 506  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46360741 tgctccataaatatcattctcttagaatgtctataaactaatgaaaatacattaatttagtttttaaactatcatgaaagacaaccaatttc 46360832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 30122083 - 30122036
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtat 206  Q
    ||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  30122083 tttataagcaaaaaataattttttaggtatattgaataattaatgtat 30122036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 23673484 - 23673437
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtat 206  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  23673484 tttataagcaaaaaataactttttaggtatattgaataattaatgtat 23673437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 52840280 - 52840332
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtatttaac 211  Q
    ||||||||||||| |||| |||||||| | ||| |||||||||||||| ||||    
T  52840280 tttataagcaaaaaataattttttaagtacattaaataattaatgtatctaac 52840332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 41517492 - 41517445
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtat 206  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  41517492 tttataagcaaaaaataactttttaagtacattgaataattaatgtat 41517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 21738246 - 21738283
Alignment:
Q  243 agtaagtttttatgaaattttatataatcagtgcattg 280  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21738246 agtaagtttttataaaattttatataatcagtgcattg 21738283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 472424 - 472473
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtattt 208  Q
    ||||||| ||||||||||||||||| |  |||||||||| ||||||||||    
T  472424 tttataaacaaaatataactttttaggtttattgaataactaatgtattt 472473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 24253019 - 24252962
Alignment:
Q  149 tctgatcatgtttataagcaaaatataactttttaagcatattgaataattaatgtat 206  Q
    |||| |||| ||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  24253019 tctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtat 24252962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 2399833 - 2399781
Alignment:
Q  154 tcatgtttataagcaaaatataactttttaagcatattgaataattaatgtat 206  Q
    |||| |||||||  |||| ||||||||||||| ||||||||||||||||||||    
T  2399833 tcatatttataaataaaaaataactttttaagtatattgaataattaatgtat 2399781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 23097620 - 23097575
Alignment:
Q  168 aaaatataactttttaagcatattgaataattaatgtatttaactt 213  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||    
T  23097620 aaaaaataactttttaggtagattgaataattaatgtatttaactt 23097575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 41150034 - 41150070
Alignment:
Q  249 tttttatgaaattttatataatcagtgcattgtgaat 285  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  41150034 tttttatgaaaatttgtataatcagtgcattgtgaat 41150070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 5070857 - 5070891
Alignment:
Q  459 aaatacatcaatttagtttttaaactatcatgaaa 493  Q
    |||| ||||||||||||||||||||||||||||||    
T  5070857 aaatgcatcaatttagtttttaaactatcatgaaa 5070891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 5700162 - 5700113
Alignment:
Q  159 tttataagcaaaatataactttttaagcatattgaataattaatgtattt 208  Q
    ||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  5700162 tttataagcaaaaaacaactttttaagtacattgaataattaatgcattt 5700113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 713 - 642
Alignment:
Q  294 tttttaaatagtaattacctaatttataatgctta--gagtgtctgagaacactcgttatcaaaacccttaa 363  Q
    |||||||| | ||||||| || |||| ||||||||  ||||||||| || ||||||||| ||||||||||||    
T  713 tttttaaacactaattacttattttagaatgcttaaagagtgtctgggagcactcgttaacaaaacccttaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 4695172 - 4695128
Alignment:
Q  236 tggagggagtaagtttttatgaaattttatataatcagtgcattg 280  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  4695172 tggagggagtaattttttatggaagtttgtataatcagtgcattg 4695128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University