View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9623_low_18 (Length: 473)

Name: NF9623_low_18
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9623_low_18
NF9623_low_18
[»] chr5 (6 HSPs)
chr5 (42-289)||(17219042-17219289)
chr5 (223-288)||(17219747-17219812)
chr5 (222-292)||(31658205-31658275)
chr5 (309-358)||(31659048-31659097)
chr5 (223-292)||(31930567-31930636)
chr5 (252-292)||(36258248-36258288)
[»] chr3 (6 HSPs)
chr3 (42-245)||(18371603-18371808)
chr3 (18-153)||(35651314-35651449)
chr3 (223-292)||(35650821-35650890)
chr3 (312-398)||(35652182-35652268)
chr3 (311-354)||(22980019-22980062)
chr3 (310-354)||(7565330-7565374)
[»] chr4 (11 HSPs)
chr4 (309-427)||(30937969-30938087)
chr4 (223-290)||(32647686-32647753)
chr4 (221-280)||(30057132-30057191)
chr4 (223-282)||(32648383-32648442)
chr4 (223-292)||(19330202-19330271)
chr4 (309-398)||(53650894-53650983)
chr4 (221-289)||(30057832-30057900)
chr4 (223-292)||(6114974-6115043)
chr4 (309-358)||(30057854-30057903)
chr4 (223-280)||(49999573-49999630)
chr4 (321-398)||(51681993-51682069)
[»] chr6 (8 HSPs)
chr6 (235-292)||(29200704-29200761)
chr6 (223-289)||(28295443-28295509)
chr6 (223-289)||(28516564-28516630)
chr6 (223-289)||(13355995-13356061)
chr6 (223-280)||(29201393-29201450)
chr6 (242-292)||(30322383-30322433)
chr6 (309-374)||(18100533-18100598)
chr6 (313-357)||(9956057-9956101)
[»] chr8 (3 HSPs)
chr8 (241-289)||(42685462-42685510)
chr8 (246-292)||(40317144-40317190)
chr8 (244-288)||(22810454-22810498)
[»] chr1 (8 HSPs)
chr1 (244-291)||(51308555-51308602)
chr1 (312-398)||(34083136-34083222)
chr1 (223-280)||(26779722-26779779)
chr1 (248-290)||(3929261-3929303)
chr1 (223-289)||(45817294-45817360)
chr1 (222-292)||(48578329-48578399)
chr1 (223-280)||(52380994-52381051)
chr1 (222-266)||(45528415-45528459)
[»] chr7 (3 HSPs)
chr7 (309-357)||(32303856-32303904)
chr7 (252-292)||(45551947-45551987)
chr7 (246-292)||(48625060-48625106)
[»] chr2 (7 HSPs)
chr2 (225-291)||(6204289-6204355)
chr2 (246-292)||(23175271-23175317)
chr2 (246-292)||(23386987-23387033)
chr2 (246-292)||(23586528-23586574)
chr2 (242-292)||(24398715-24398765)
chr2 (242-292)||(24399445-24399495)
chr2 (309-354)||(36780883-36780928)
[»] scaffold0091 (1 HSPs)
scaffold0091 (223-280)||(2772-2829)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 42 - 289
Target Start/End: Complemental strand, 17219289 - 17219042
Alignment:
Q  42 agagccgtcatgaaccaccagatttggtggtggaaggaggtgacggcgattctacgttggtggaaggttgggggcgccgaatcaggtggtggaaggtgag 141  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  17219289 agagctgtcatgaaccaccagatttggtgggggaaggaggtgacggcaattctacggtggtggaaggttgggggcgccgaatcaggtggtggaatgtgag 17219190  T
Q  142 gagaagaagaacaaataatggttaatgtgagaagaaggaaaaacgctttgaaggtgtatgttataatctcagcctttcctattttaatctaatggctcat 241  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17219189 gagaagaagaacggataatggttaacgtgagaagaaggaaaaatgctttgaaggtgtatgttataatctcagcctttcctattttaatctaatggctcaa 17219090  T
Q  242 attcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17219089 attcattcctaccattctcacataaaatactcattctcacttgatatg 17219042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 17219747 - 17219812
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatat 288  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17219747 ttttaatctgatggctcctattcattcctaccattctcacataaaatactcattctcacttgatat 17219812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 31658275 - 31658205
Alignment:
Q  222 attttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||||||| |||||| | ||| | |||| || ||||||||||||| |||  ||||||||||||||||||||    
T  31658275 attttaatttaatggttgataattattcttatcattctcacataacatatccattctcacttgatatgccc 31658205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 31659097 - 31659048
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataaa 358  Q
    |||||||||||| ||||||||| | | |||||||||||| ||||||||||    
T  31659097 ggacatatcacatgagaatgacatttgtatgtgagaatggtgagaataaa 31659048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 31930636 - 31930567
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||||| ||||||   ||| ||||  ||||||||||||||| |||||||||||||  ||||||||||    
T  31930636 ttttaatctgatggctgcaatttattctcaccattctcacataagatactcattctcatgtgatatgccc 31930567  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 36258288 - 36258248
Alignment:
Q  252 accattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||||||||||| |||||||||||||  ||||||||||    
T  36258288 accattctcacataagatactcattctcatgtgatatgccc 36258248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 18371808 - 18371603
Alignment:
Q  42 agagccgtcatgaaccaccagatttggtggtggaaggaggtgacggcgattc--tacgttggtggaaggttgggggcgccgaatcaggtggtggaaggtg 139  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |  |||| |||| |||||||||||||||||||| |||||||||||||||    
T  18371808 agagtcgtcatgaaccaccaaatttggtggtggaaggaggtgacggcgatcccctacggtggttgaaggttgggggcgccgaattaggtggtggaaggtg 18371709  T
Q  140 aggagaagaagaacaaataatggttaatgtgagaagaaggaaaaacgctttgaaggtgtatgttataatctcagcctttcctattttaatctaatggctc 239  Q
    ||| ||||||||||  ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||    
T  18371708 aggtgaagaagaacggataatagttaacgtgagaagaaggaagaacgccttgaaggtgtatgttataatctcagccttgcttattttaatctgatggctc 18371609  T
Q  240 atattc 245  Q
     |||||    
T  18371608 ctattc 18371603  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 35651314 - 35651449
Alignment:
Q  18 ataggaaggtggcggcggcggattagagccgtcatgaaccaccagatttggtggtggaaggaggtgacggcgattctacgttggtggaaggttgggggcg 117  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  35651314 ataggaaggtggcgacggcggatcagagccgtcatgaaccaccagatttgatggtggaaggaggtgacggcgattctacggtggtggaaagttgggggcg 35651413  T
Q  118 ccgaatcaggtggtggaaggtgaggagaagaagaac 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  35651414 ccgaatcaggtggtggaaggtgaggagaagaagaac 35651449  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 35650890 - 35650821
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||||||||||||| ||| | ||||||||| ||||||||||||| ||   ||||||||||||||||||||    
T  35650890 ttttaatctaatggttcaaaatcattcctatcattctcacataagatgtccattctcacttgatatgccc 35650821  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 35652268 - 35652182
Alignment:
Q  312 catatcacacgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatttaaaagaaagggctgtgattaaaa 398  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||||  ||| || ||||||| ||||| || || || ||||||||    
T  35652268 catatcacatgagaatgacttttgtatgtgagaatggtgagaataaaccacagcctttagattaaaaagtaaaggttgagattaaaa 35652182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 22980019 - 22980062
Alignment:
Q  311 acatatcacacgagaatgacttctatatgtgagaatgatgagaa 354  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||    
T  22980019 acatatcacatgagaatgacttttatatgtgagaatggtgagaa 22980062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 7565374 - 7565330
Alignment:
Q  310 gacatatcacacgagaatgacttctatatgtgagaatgatgagaa 354  Q
    ||||||||||| |||||||| || | |||||||||||||||||||    
T  7565374 gacatatcacatgagaatgatttttgtatgtgagaatgatgagaa 7565330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 427
Target Start/End: Original strand, 30937969 - 30938087
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatttaaaagaaagggctgtgattaaaatgtgactatt 408  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||| ||||||| ||||| |||||||  | |||||| |||   |||    
T  30937969 ggacatatcacatgagaatgacttctatatgtgagaatgatgagaataaattgaaaccattagattaaaaagtaagggctcagcttaaaacgtgtgcatt 30938068  T
Q  409 tgttaatcatgtgaccaaa 427  Q
    ||  |||||||||||||||    
T  30938069 tgccaatcatgtgaccaaa 30938087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 32647753 - 32647686
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgc 290  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||  |||| ||||||||||||    
T  32647753 ttttaatctgatggctcctattcattcctatcattctcacataaaatacctattcgcacttgatatgc 32647686  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 30057191 - 30057132
Alignment:
Q  221 tattttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||  |||||||||    
T  30057191 tattttaatctaatggctcatattcattcttatcattctcacatataattgtcattctca 30057132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 32648383 - 32648442
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcact 282  Q
    ||||||||| ||||||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  32648383 ttttaatctgatggctcctattcattcctattattctcacataaaatacccattctcact 32648442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 19330202 - 19330271
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||||||||||||| | ||| |  ||||||||||||||||||| || | |||||||||| ||||||||||    
T  19330202 ttttaatctaatggttgataattgttcctaccattctcacatataaaagtcattctcacatgatatgccc 19330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 53650894 - 53650983
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatttaaaagaaagggctgtgattaaaa 398  Q
    |||||||||||| || ||||  || | |||||||||||| |||||||||| |||| || ||||||| ||||| || ||||| ||||||||    
T  53650894 ggacatatcacatgataatggtttttgtatgtgagaatggtgagaataaactacagcctttagattaaaaagtaaaggctgagattaaaa 53650983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 30057832 - 30057900
Alignment:
Q  221 tattttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    ||||||||||||||||||| |||| |||| || |||||||||||| |||  |||||||||  |||||||    
T  30057832 tattttaatctaatggctcctatttattcttatcattctcacatataattgtcattctcatgtgatatg 30057900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 6114974 - 6115043
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||||| ||| ||  |||| |||||||||||||||||||| ||   | |||||||||||||||||||    
T  6114974 ttttaatctgatgcctactatttattcctaccattctcacatataaatgttattctcacttgatatgccc 6115043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 30057903 - 30057854
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataaa 358  Q
    |||||||||||| |||||||||   |||||||||||||||| ||||||||    
T  30057903 ggacatatcacatgagaatgacaattatatgtgagaatgataagaataaa 30057854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 49999573 - 49999630
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    ||||||||||||||  |||| ||||||  | ||||||||||||||||| |||||||||    
T  49999573 ttttaatctaatggtccataatcattctgatcattctcacataaaatagtcattctca 49999630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 51681993 - 51682069
Alignment:
Q  321 cgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatttaaaagaaagggctgtgattaaaa 398  Q
    |||||||||| | |||||||||||||| |||||||||| |||| ||  |||| ||||||| ||||| || ||||||||    
T  51681993 cgagaatgacatttatatgtgagaatggtgagaataaattacagccaataga-ttaaaagcaagggatgcgattaaaa 51682069  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 29200761 - 29200704
Alignment:
Q  235 ggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29200761 ggctcctattcattcctaccattctcacataaaatactcattctcacttgatatgccc 29200704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 28295443 - 28295509
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    |||| ||||| ||||||| | | |||||||| |||||||| ||||||||||||||||||||||||||    
T  28295443 ttttgatctagtggctcaaaattattcctactattctcacctaaaatactcattctcacttgatatg 28295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 28516630 - 28516564
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    |||| ||||| ||||||| | | |||||||| |||||||| ||||||||||||||||||||||||||    
T  28516630 ttttgatctagtggctcaaaattattcctactattctcacctaaaatactcattctcacttgatatg 28516564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 13355995 - 13356061
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    |||||||||||||| ||| | ||||||||| |||||||| |||| ||  ||||||||||||||||||    
T  13355995 ttttaatctaatggttcaaaatcattcctatcattctcaaataagatgttcattctcacttgatatg 13356061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 29201393 - 29201450
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    ||||||| | ||||||| ||||||||| || ||||||||||||||||| |||||||||    
T  29201393 ttttaatttgatggctcctattcattcttagcattctcacataaaatattcattctca 29201450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 30322433 - 30322383
Alignment:
Q  242 attcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||||  ||||||||||||||| |||||||||||||  ||||||||||    
T  30322433 attcattctcaccattctcacataagatactcattctcatgtgatatgccc 30322383  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 18100533 - 18100598
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatt 374  Q
    |||||||||||| ||||||||  | | ||| |||||||||||||||||||  |||||| |||||||    
T  18100533 ggacatatcacatgagaatgaactttttatatgagaatgatgagaataaatcacaaccattagatt 18100598  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 9956057 - 9956101
Alignment:
Q  313 atatcacacgagaatgacttctatatgtgagaatgatgagaataa 357  Q
    ||||| || ||||||||||| | ||||||||||||||||||||||    
T  9956057 atatcccatgagaatgacttttgtatgtgagaatgatgagaataa 9956101  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 42685510 - 42685462
Alignment:
Q  241 tattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  42685510 tattcattcctaccattctcatataaaatactcattctcattagatatg 42685462  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 40317190 - 40317144
Alignment:
Q  246 attcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||| ||||||||||||||||||   |||||||||||||||||||||    
T  40317190 attcttaccattctcacataaaaatatcattctcacttgatatgccc 40317144  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 22810454 - 22810498
Alignment:
Q  244 tcattcctaccattctcacataaaatactcattctcacttgatat 288  Q
    ||||||||| ||||||||||||| ||| ||||||||| |||||||    
T  22810454 tcattcctatcattctcacataagatattcattctcatttgatat 22810498  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 51308555 - 51308602
Alignment:
Q  244 tcattcctaccattctcacataaaatactcattctcacttgatatgcc 291  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||    
T  51308555 tcattcctaccattctcacataaaaatatcattctcacttgatatgcc 51308602  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 34083222 - 34083136
Alignment:
Q  312 catatcacacgagaatgacttctatatgtgagaatgatgagaataaaatacaaccgttagatttaaaagaaagggctgtgattaaaa 398  Q
    ||||||||| ||||||||||| | || ||||||||||| ||||||||  | | |||| |||||||||||||| || || ||||||||    
T  34083222 catatcacatgagaatgacttttgtaggtgagaatgataagaataaatgatagccgtcagatttaaaagaaaaggatgagattaaaa 34083136  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 26779722 - 26779779
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    |||| ||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||    
T  26779722 ttttgatctaatggttcataatcattctcaccattctcacataaaataatcattctca 26779779  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 3929303 - 3929261
Alignment:
Q  248 tcctaccattctcacataaaatactcattctcacttgatatgc 290  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||    
T  3929303 tcctatcattctcacataaaatagtcattctcacttgttatgc 3929261  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 45817360 - 45817294
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatg 289  Q
    |||||||||||||| | ||| |  ||||||||||||||||||| || | |||||||||| |||||||    
T  45817360 ttttaatctaatggttgataattgttcctaccattctcacatataaaaatcattctcacatgatatg 45817294  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 48578329 - 48578399
Alignment:
Q  222 attttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||| ||||||||| | | ||| ||||||| |||||||||||||  ||||||||||||  ||||||||||    
T  48578329 attttgatctaatggttgagatttattcctatcattctcacataagttactcattctcatgtgatatgccc 48578399  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 52381051 - 52380994
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    ||||||| | |||||||||||||||||||| |||||||| ||| |||  |||||||||    
T  52381051 ttttaatatgatggctcatattcattcctatcattctcatatataattgtcattctca 52380994  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 45528459 - 45528415
Alignment:
Q  222 attttaatctaatggctcatattcattcctaccattctcacataa 266  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||    
T  45528459 attttaatctaatgactcatattcattctcaccattctcatataa 45528415  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 32303904 - 32303856
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaataa 357  Q
    |||||||||||| ||||||||||| | |||||||||||| |||||||||    
T  32303904 ggacatatcacatgagaatgacttttgtatgtgagaatggtgagaataa 32303856  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 45551987 - 45551947
Alignment:
Q  252 accattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  45551987 accattctcacataagatactcattctcatttgatatgccc 45551947  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 48625106 - 48625060
Alignment:
Q  246 attcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  48625106 attcctatcattctcacataacatatccattctcacttgatatgccc 48625060  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 6204355 - 6204289
Alignment:
Q  225 ttaatctaatggctcatattcattcctaccattctcacataaaatactcattctcacttgatatgcc 291  Q
    ||||||| ||||||   ||||||||  ||||||||||||||| |||||||||||||  |||||||||    
T  6204355 ttaatcttatggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 6204289  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 23175271 - 23175317
Alignment:
Q  246 attcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  23175271 attcctatcattctcacataacatatccattctcacttgatatgccc 23175317  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 23387033 - 23386987
Alignment:
Q  246 attcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  23387033 attcctatcattctcacataacatatccattctcacttgatatgccc 23386987  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 23586528 - 23586574
Alignment:
Q  246 attcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  23586528 attcctatcattctcacataacatatccattctcacttgatatgccc 23586574  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 24398765 - 24398715
Alignment:
Q  242 attcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  24398765 attcattcttaccattctcacataagttactcattctcatatgatatgccc 24398715  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 24399445 - 24399495
Alignment:
Q  242 attcattcctaccattctcacataaaatactcattctcacttgatatgccc 292  Q
    |||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  24399445 attcattcttaccattctcacataagttactcattctcatgtgatatgccc 24399495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 36780928 - 36780883
Alignment:
Q  309 ggacatatcacacgagaatgacttctatatgtgagaatgatgagaa 354  Q
    |||||||||||| ||||||||||| | |||||||||||| ||||||    
T  36780928 ggacatatcacatgagaatgacttttgtatgtgagaatggtgagaa 36780883  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 2829 - 2772
Alignment:
Q  223 ttttaatctaatggctcatattcattcctaccattctcacataaaatactcattctca 280  Q
    |||| ||||||||| ||||| ||||||  ||||||||||||||| ||| |||||||||    
T  2829 ttttgatctaatggttcataatcattctcaccattctcacataagataatcattctca 2772  T

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