View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_20 (Length: 453)
Name: NF9623_low_20
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 273 - 432
Target Start/End: Complemental strand, 34512134 - 34511975
Alignment:
| Q |
273 |
ataaaacattcgtacaagaacacgtaaacatgaagcaatgttgtcaaatagcagctatagtgacgctatagcgtcatagcatagtggaattttaacagaa |
372 |
Q |
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| T |
34512134 |
ataatacattcgtacaagaacacgtaaacatgaagcagtgttgtcaaatagcagctatagtggcgctatagcatcatagcatagtggaattttaacagaa |
34512035 |
T |
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| Q |
373 |
tgctattattatgcaaacacaattagcataaagtattgtcatatagcatcgatgtagaca |
432 |
Q |
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| T |
34512034 |
tgctattattatgcaaacacaattagcataaagtattgtcatatagcatcgatgtagaca |
34511975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 17933153 - 17933100
Alignment:
| Q |
326 |
gctatagtgacgctatagcgtcatagcatagtggaattttaacagaatgctatt |
379 |
Q |
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| T |
17933153 |
gctatagtgacgctatagctttatagcataagggaatttgaacagattgctatt |
17933100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 38095278 - 38095194
Alignment:
| Q |
193 |
gattcttactgcacttattgcaatagtatattatgttattttgatgattatgatagtaatagtattaatatagtggtcgtataaaa |
278 |
Q |
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| T |
38095278 |
gattcttactgcatttattgtaatagt-tattatgttattttgatgattacgatagtaatagtattaatatagtggtcgtataaaa |
38095194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38095740 - 38095674
Alignment:
| Q |
1 |
acaaacaaatgggatttgtttatcttttgtt---tgagtcactttaaataaaattttccaaaagatt |
64 |
Q |
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| T |
38095740 |
acaaacaaatgggatttgtttatcttttgttgtttgagtcactttaaataaaattttccaaaagatt |
38095674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 38095367 - 38095326
Alignment:
| Q |
153 |
tcttaactattaggttatcaattatttaactgttattagaga |
194 |
Q |
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| T |
38095367 |
tcttaactattaggttatcaattatttaactgttattagaga |
38095326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 38095670 - 38095634
Alignment:
| Q |
104 |
actaatagataataacagtattcaaatcttctctatc |
140 |
Q |
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| T |
38095670 |
actaatagataataacagtattcaaatcttctctatc |
38095634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 33525105 - 33525049
Alignment:
| Q |
308 |
caatgttgtcaaatagcagctatagtgacgctatagcgtcatagcatagtggaattt |
364 |
Q |
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| T |
33525105 |
caatgttgtcaaatagttgctatagcgatactatagtgacatagcatagtggaattt |
33525049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 1318652 - 1318618
Alignment:
| Q |
310 |
atgttgtcaaatagcagctatagtgacgctatagc |
344 |
Q |
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| T |
1318652 |
atgttgtcaaatagcagctgtagtgacgctatagc |
1318618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 8455083 - 8455139
Alignment:
| Q |
308 |
caatgttgtcaaatagcagctatagtgacgctatagcgtcatagcatagtggaattt |
364 |
Q |
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| T |
8455083 |
caatgttgttacttagcagctatagtgacactataccgttatagcgtagtggaattt |
8455139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 52445016 - 52444956
Alignment:
| Q |
309 |
aatgttgtcaaatagcagctatagtgacgctatagcgtcatagcatagtggaattttaaca |
369 |
Q |
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|||||||||||||||| |||||||| ||||||||| ||| |||||| ||||||||||| |
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| T |
52445016 |
aatgttgtcaaatagctgctatagtagcgctatagcaccattgcatagcagaattttaaca |
52444956 |
T |
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