View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9623_low_21 (Length: 453)

Name: NF9623_low_21
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9623_low_21
NF9623_low_21
[»] chr1 (18 HSPs)
chr1 (284-447)||(24233242-24233404)
chr1 (187-299)||(24233106-24233218)
chr1 (54-128)||(45692459-45692530)
chr1 (15-141)||(24513439-24513563)
chr1 (25-108)||(24227247-24227329)
chr1 (187-270)||(24227401-24227487)
chr1 (211-415)||(24626512-24626722)
chr1 (59-130)||(24626365-24626433)
chr1 (246-331)||(25610756-25610841)
chr1 (44-125)||(24628864-24628942)
chr1 (239-302)||(45692675-45692738)
chr1 (239-281)||(24242631-24242673)
chr1 (243-279)||(24513296-24513332)
chr1 (242-340)||(23895926-23896024)
chr1 (242-279)||(23898453-23898490)
chr1 (242-351)||(24221770-24221879)
chr1 (243-279)||(24634580-24634616)
chr1 (246-306)||(25869046-25869106)
[»] chr7 (2 HSPs)
chr7 (195-424)||(1420902-1421134)
chr7 (56-140)||(1420759-1420844)
[»] scaffold0015 (2 HSPs)
scaffold0015 (194-369)||(32055-32236)
scaffold0015 (194-369)||(40107-40288)
[»] chr8 (2 HSPs)
chr8 (25-108)||(23773099-23773181)
chr8 (187-270)||(23772941-23773027)
[»] chr4 (2 HSPs)
chr4 (246-351)||(11033102-11033210)
chr4 (44-125)||(11033304-11033382)
[»] chr5 (1 HSPs)
chr5 (256-351)||(3181882-3181977)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 284 - 447
Target Start/End: Original strand, 24233242 - 24233404
Alignment:
Q  284 acccaactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaacaacccactttaatctacgattctctctaaagataaacagca 383  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  24233242 acccaattcaagtcttgaatcttcaaacacttaatagtatcatttt-gcaatcgtaaacaacccactttaatctacgatcctctctaaagataagcagca 24233340  T
Q  384 cctggttgttgtcctcagaaatatagactatcctggtataaacagcgtcataaggaacaccaaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  24233341 cctggttgttgtcctcagaaatatagactatcctggtataaacagtgtgataaggaacatcaaa 24233404  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 24233106 - 24233218
Alignment:
Q  187 gttgggtttgaatctcatactcaagtgacatagcacatcatctatatcctaatataatcaaggtgatatcaaactttcaacgtacacttttgattcaacc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24233106 gttgggtttgaatctcatactcaagtgacatagcacatcatctatctcctaatataatcaaggtgatatcaaactttcaacgtagacttttgattcaacc 24233205  T
Q  287 caactgaagtctt 299  Q
    ||||  |||||||    
T  24233206 caacccaagtctt 24233218  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 45692459 - 45692530
Alignment:
Q  54 acaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaataattaacaatgatccatgaa 128  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||   |||||||||||||||||||||    
T  45692459 acaaatgaaaataacaaagcaatttctcaagctgcaaatttcattcactat---taattaacaatgatccatgaa 45692530  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 24513563 - 24513439
Alignment:
Q  15 acaaagcacaattcagaaccaacaaatcttaacttacaaacaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaataattaa 114  Q
    |||| |||| ||| |||||||| || ||| |||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||   |||||||    
T  24513563 acaatgcacgattgagaaccaataattct-aactgacaaacaaatgaaaatagcaaaacaatctctcaagctgcaaatttcattcactat---taattaa 24513468  T
Q  115 caatg--atccatgaagttgccaacactc 141  Q
    |||||  |||||||||||  |||||||||    
T  24513467 caatgtaatccatgaagtgaccaacactc 24513439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 24227247 - 24227329
Alignment:
Q  25 attcagaaccaacaaatcttaacttacaaacaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaat 108  Q
    ||||||||||||||| ||| |||| |||||||||| ||||||| |||||||||||| ||||||||| |||||||||| ||||||    
T  24227247 attcagaaccaacaactct-aactaacaaacaaattaaaataataaaacaatttcttaagctgcaaatttcattcaccattaat 24227329  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 24227401 - 24227487
Alignment:
Q  187 gttgggtttgaatctcatactcaagtgacatagcacatcatctatatcctaa---tataatcaaggtgatatcaaactttcaacgta 270  Q
    |||||| | |||||||||||||||||||||||||||| |||||| |||||||   ||||| || ||||||||||||||||| |||||    
T  24227401 gttgggatcgaatctcatactcaagtgacatagcacaccatctacatcctaatattataaacagggtgatatcaaactttccacgta 24227487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 415
Target Start/End: Original strand, 24626512 - 24626722
Alignment:
Q  211 gtgacatagcacatcatctatatcctaatataatca---aggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttg---aatc 304  Q
    |||||||||| ||||||||| |||||||||| ||||   ||||||||| || |||||||| || |||| |||||| ||||   | |||||||    ||||    
T  24626512 gtgacatagcgcatcatctacatcctaatattatcatcaaggtgatattaagctttcaacatatacttctgattctacccgtttcaagtcttctttaatc 24626611  T
Q  305 ttcaaacgcttaatagtatcatttttggaattgtaaacaacccactttaatctacgattctctctaaagataaacagcacctggttgttgtcctcagaaa 404  Q
    || |||| |||  | ||||||||  |||||| ||||| ||||||||| ||| || | | ||||||||||| || || ||| ||||||| |||||||||||    
T  24626612 tttaaactctttgtggtatcattcatggaatcgtaaaaaacccacttcaatgtatggtcctctctaaagagaagcaacacatggttgtcgtcctcagaaa 24626711  T
Q  405 tatagactatc 415  Q
     ||| ||||||    
T  24626712 catatactatc 24626722  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 24626365 - 24626433
Alignment:
Q  59 tgaaaataacaaaacaatttctcaagctgcaactttcattcactattaataattaacaatgatccatgaagt 130  Q
    ||||||||||||||||||||||||||||  || ||||||||| |||   |||||||||||||||||||||||    
T  24626365 tgaaaataacaaaacaatttctcaagcttgaaatttcattcaatat---taattaacaatgatccatgaagt 24626433  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 25610756 - 25610841
Alignment:
Q  246 aaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttgaatcttcaaacgcttaatagtatcatttttg 331  Q
    ||||| ||||||||||||||||||| || |||||||| ||| |||| || |||| ||||||  ||| ||| |||||||||||||||    
T  25610756 aaggttatatcaaactttcaacgtagacatttgattctaccaaactcaaatcttcaatcttggaactctttatagtatcatttttg 25610841  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 24628864 - 24628942
Alignment:
Q  44 taacttacaaacaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaataattaacaatgatccat 125  Q
    ||||| |||||| ||| |||||||||||||||| ||| ||| ||||| |||||||||||||   | ||||||||||||||||    
T  24628864 taactaacaaacgaataaaaataacaaaacaatctcttaagatgcaaatttcattcactat---tgattaacaatgatccat 24628942  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 45692675 - 45692738
Alignment:
Q  239 tataatcaaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttgaa 302  Q
    |||||| |||||||||||||||||| || ||| |||||||| || |||||||| ||||||||||    
T  45692675 tataattaaggtgatatcaaactttgaatgtagacttttgaatctacccaactcaagtcttgaa 45692738  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 24242631 - 24242673
Alignment:
Q  239 tataatcaaggtgatatcaaactttcaacgtacacttttgatt 281  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  24242631 tataatcaaggtgatatcaaactttcaacgtagatttttgatt 24242673  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 24513332 - 24513296
Alignment:
Q  243 atcaaggtgatatcaaactttcaacgtacacttttga 279  Q
    |||||||||||||||||||||||||||| ||||||||    
T  24513332 atcaaggtgatatcaaactttcaacgtagacttttga 24513296  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 23895926 - 23896024
Alignment:
Q  242 aatcaaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaa 340  Q
    |||||||| ||||||||||||||||| || ||  | ||||| ||  ||||  ||||||| ||||| ||   ||| ||||||||||||||||||||||||    
T  23895926 aatcaaggagatatcaaactttcaacatagacagtggattctacagaactccagtcttgcatcttgaatttctttatagtatcatttttggaattgtaa 23896024  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 23898453 - 23898490
Alignment:
Q  242 aatcaaggtgatatcaaactttcaacgtacacttttga 279  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  23898453 aatcaaggtgatatcaaactctcaacgtagacttttga 23898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 24221770 - 24221879
Alignment:
Q  242 aatcaaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaa 341  Q
    ||||||||||||| |||||| |||| ||| ||  |||| || ||||||||||||||||| ||||| | |  ||| ||||||  ||||||| |||  ||||    
T  24221770 aatcaaggtgataccaaactctcaatgtagaccattgagtctacccaactgaagtcttggatcttgatagtctttatagtactatttttgcaatcataaa 24221869  T
Q  342 caacccactt 351  Q
    | ||||||||    
T  24221870 cgacccactt 24221879  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 24634580 - 24634616
Alignment:
Q  243 atcaaggtgatatcaaactttcaacgtacacttttga 279  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  24634580 atcatggtgatatcaaactttcaacgtagacttttga 24634616  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 25869046 - 25869106
Alignment:
Q  246 aaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtcttgaatctt 306  Q
    ||||||||| |||||| |||||||| |  ||||| || |||||||||||||||| ||||||    
T  25869046 aaggtgataccaaactctcaacgtagagctttgagtctacccaactgaagtcttcaatctt 25869106  T

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Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 195 - 424
Target Start/End: Original strand, 1420902 - 1421134
Alignment:
Q  195 tgaatctcatactcaagtgacatagcacatcatctatatcctaatat---aatcaaggtgatatcaaactttcaacgtacacttttgattcaacccaact 291  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||   |||||||||||||||||||||||||| || |||| |||||| ||||||||    
T  1420902 tgaatctcattctcaagtgatgtagcacatcatctacatcctaatattataatcaaggtgatatcaaactttcaacatagacttctgattctacccaact 1421001  T
Q  292 gaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaacaacccactttaatctacgattctctctaaagataaacagcacctggttg 391  Q
     ||||||||||||||||||  ||| |||||||||||||| ||||  ||||||  |||||| ||| |||||| ||||||||||| || ||||||  |||||    
T  1421002 caagtcttgaatcttcaaattctttatagtatcattttttgaatcataaacagtccacttcaatttacgatcctctctaaagacaagcagcacacggttg 1421101  T
Q  392 ttgtcctcagaaatatagactatcctggtataa 424  Q
    | |||||| |||||||| |||||||||||||||    
T  1421102 tcgtcctccgaaatatatactatcctggtataa 1421134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 1420759 - 1420844
Alignment:
Q  56 aaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaat-aattaacaatgatccatgaagttgccaacact 140  Q
    ||||| |||||||||| |||||||||||||| ||| ||| | ||||||||||| || |||||||||| ||||||||||||||||||    
T  1420759 aaatggaaataacaaagcaatttctcaagcttcaaattttactcactattaatcaactaacaatgatacatgaagttgccaacact 1420844  T

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Target: scaffold0015 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 32055 - 32236
Alignment:
Q  194 ttgaatctcatactcaagtgacatagcacatcatctatatcctaata------taatcaaggtgatatcaaactttcaacgtacacttttgattcaaccc 287  Q
    ||||||||||||||||||||| | || ||| |||||| |||||||||      || ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  32055 ttgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaactttccacgtagacttttgattctaccc 32154  T
Q  288 aactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaacaacccactttaatctacgattctctct 369  Q
    || | ||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||| || |||||||||| ||||||    
T  32155 aattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctctct 32236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 40107 - 40288
Alignment:
Q  194 ttgaatctcatactcaagtgacatagcacatcatctatatcctaata------taatcaaggtgatatcaaactttcaacgtacacttttgattcaaccc 287  Q
    ||||||||||||||||||||| | || ||| |||||| |||||||||      || ||||||||||||||||||| | ||||| ||||||||||| ||||    
T  40107 ttgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaacttaccacgtagacttttgattctaccc 40206  T
Q  288 aactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaacaacccactttaatctacgattctctct 369  Q
    || | ||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||| || |||||||| | ||||||    
T  40207 aattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacggtcctctct 40288  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 23773181 - 23773099
Alignment:
Q  25 attcagaaccaacaaatcttaacttacaaacaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaat 108  Q
    ||||||||||||||| ||| |||| |||||||||| ||||||| |||||||||||| ||||||||| |||||||||| ||||||    
T  23773181 attcagaaccaacaactct-aactaacaaacaaattaaaataataaaacaatttcttaagctgcaaatttcattcaccattaat 23773099  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 23773027 - 23772941
Alignment:
Q  187 gttgggtttgaatctcatactcaagtgacatagcacatcatctatatcctaa---tataatcaaggtgatatcaaactttcaacgta 270  Q
    |||||| | |||||||||||||||||||||||||||| |||||| |||||||   ||||| || ||||||||||||||||| |||||    
T  23773027 gttgggatcgaatctcatactcaagtgacatagcacaccatctacatcctaatattataaacagggtgatatcaaactttccacgta 23772941  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 11033210 - 11033102
Alignment:
Q  246 aaggtgatatcaaactttcaacgtacacttttgattcaacccaactgaagtct---tgaatcttcaaacgcttaatagtatcatttttggaattgtaaac 342  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||  ||||||   |||||||| |||| ||| ||||||| |||||| |||| | ||||    
T  11033210 aaggtgatatcaaactttcaacgtagacttttgattctaaccaaccaaagtctttctgaatcttgaaactctttatagtataatttttagaatcgcaaac 11033111  T
Q  343 aacccactt 351  Q
    |||||||||    
T  11033110 aacccactt 11033102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 11033382 - 11033304
Alignment:
Q  44 taacttacaaacaaatgaaaataacaaaacaatttctcaagctgcaactttcattcactattaataattaacaatgatccat 125  Q
    ||||| |||||| ||| |||||||||||||||| ||| ||| ||||| |||||||||||||   ||||||||||||||||||    
T  11033382 taactaacaaacgaataaaaataacaaaacaatctcttaagatgcaaatttcattcactat---taattaacaatgatccat 11033304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 3181977 - 3181882
Alignment:
Q  256 caaactttcaacgtacacttttgattcaacccaactgaagtcttgaatcttcaaacgcttaatagtatcatttttggaattgtaaacaacccactt 351  Q
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T  3181977 caaactctcaacgtagacttttgattctacccaactaaagtcttgactcttggcactctttataaaaccattttcggaatcgtaaacaacccactt 3181882  T

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