View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_22 (Length: 447)
Name: NF9623_low_22
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 10368547 - 10368119
Alignment:
| Q |
1 |
tcacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtt |
100 |
Q |
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| T |
10368547 |
tcacaagtttggtgacatttatataggctctttgtagatgacatattaaatcaatcaatccgttgaattgaaagctctcgtagaattaaaaattattgtt |
10368448 |
T |
|
| Q |
101 |
aatgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcnnn |
200 |
Q |
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| T |
10368447 |
aatgagatgaaacataactgttgcaaactaagaactcaagaaaagtaaaatagccttgacatttatataggctcatgctaaccaaaacttgattgtcaaa |
10368348 |
T |
|
| Q |
201 |
nnnntaaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcattgcttactgatcatgtgcattgatt |
300 |
Q |
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| T |
10368347 |
aaaataaaatttcaatgtgaatttattctaacagatgatgtaaaagactccaacaaaataaaactatcttatcattgcttactgatcatgtgcattgatt |
10368248 |
T |
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| Q |
301 |
tcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaata |
400 |
Q |
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| T |
10368247 |
tcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatccaacggctttcagtccatgtatgatccacaagatgaagctcaaata |
10368148 |
T |
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| Q |
401 |
attttctaaccatagaatgttgtccattc |
429 |
Q |
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| T |
10368147 |
attttctaaccatagaatgttgtccattc |
10368119 |
T |
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