View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_25 (Length: 415)
Name: NF9623_low_25
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 32896492 - 32896089
Alignment:
| Q |
1 |
taatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctagactaaacttttgtctt |
100 |
Q |
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| T |
32896492 |
taatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctagactaaacttttgtctt |
32896393 |
T |
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| Q |
101 |
gtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcatatcctcaagttgtgcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32896392 |
gtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaagcgtttacattatagccagaataaacctcaaatcctcaagttgtgcaaat |
32896293 |
T |
|
| Q |
201 |
tttatcatatgcacaattggatgtacattgtacatctctgctaccttaccagctaaagatacttgctatattctgcattcttctacgtctccgtctccgc |
300 |
Q |
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| T |
32896292 |
tttatcatatgcacacttggatgtacattgtacatctctgctaccttaccagctaaggatgcttgctatattctgcattcttctacgtctccgtctccac |
32896193 |
T |
|
| Q |
301 |
tattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacc |
400 |
Q |
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| T |
32896192 |
tattgtactgccttttaactttggtcttgatatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccatgatgacaataaaaccacc |
32896093 |
T |
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| Q |
401 |
tatg |
404 |
Q |
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|||| |
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| T |
32896092 |
tatg |
32896089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 32919604 - 32919521
Alignment:
| Q |
321 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatg |
404 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatg |
32919521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 32885692 - 32885583
Alignment:
| Q |
42 |
gatttgtctaaatggccacct-aggttgtataattctggtctagactaaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgt |
140 |
Q |
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||||||||||||||||||| | ||||| || ||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
32885692 |
gatttgtctaaatggccacattaggttataaaattctggtatagactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgt |
32885593 |
T |
|
| Q |
141 |
tttacacaaa |
150 |
Q |
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|||||||||| |
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| T |
32885592 |
tttacacaaa |
32885583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 32885509 - 32885369
Alignment:
| Q |
264 |
tgctatattctgcattcttctacgtctccgtctccgctattgtactgccttttaactttggtcttgatatcaacctctttgtcaccttctttaccccaca |
363 |
Q |
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|||||||||| |||||||||| | |||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
32885509 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
32885410 |
T |
|
| Q |
364 |
gtaacaaatatagacccatgatgacaataaaaccacctatg |
404 |
Q |
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| |||| ||| | ||||||||| |||||||| |||||||| |
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| T |
32885409 |
gcaacagatacaaacccatgatcacaataaatgcacctatg |
32885369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 314 - 393
Target Start/End: Original strand, 19503529 - 19503608
Alignment:
| Q |
314 |
tttaactttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataa |
393 |
Q |
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|||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
19503529 |
tttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataa |
19503608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 32935838 - 32935755
Alignment:
| Q |
321 |
ttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctatg |
404 |
Q |
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|||||||| | ||||| |||||||||||||||||| |||||||| |||||||| | |||||||||||||||||| |||||||| |
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| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatg |
32935755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 32953234 - 32953150
Alignment:
| Q |
319 |
ctttggtcttgatatcaacctctttgtcaccttctttaccccacagtaacaaatatagacccatgatgacaataaaaccacctat |
403 |
Q |
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|||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||| | |||||||||||| ||||| ||||||| |
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| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctat |
32953150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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