View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9623_low_26 (Length: 410)

Name: NF9623_low_26
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9623_low_26
NF9623_low_26
[»] chr6 (5 HSPs)
chr6 (18-391)||(32685670-32686030)
chr6 (56-214)||(19809814-19809972)
chr6 (268-391)||(19807508-19807631)
chr6 (18-60)||(19809986-19810028)
chr6 (211-244)||(19807691-19807724)
[»] chr3 (3 HSPs)
chr3 (56-244)||(1198208-1198396)
chr3 (268-391)||(1198025-1198148)
chr3 (18-60)||(1198410-1198452)
[»] chr2 (2 HSPs)
chr2 (56-244)||(25208748-25208936)
chr2 (268-377)||(25208996-25209105)
[»] chr8 (2 HSPs)
chr8 (56-244)||(18293492-18293680)
chr8 (268-383)||(18293317-18293432)
[»] chr4 (2 HSPs)
chr4 (268-391)||(8494626-8494749)
chr4 (113-244)||(8494807-8494938)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 32686030 - 32685670
Alignment:
Q  18 aataaaagtcaggtagtctcgagcatatcttcctcgtcatcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32686030 aataaaagtcaggtagtctcgagcatatcttcctcgtcatcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaa 32685931  T
Q  118 ataaacactgcctcgcaacaaagtgatcctcccaagcttgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcatccagg 217  Q
    | |||||||||||||||| ||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685930 acaaacactgcctcgcaataaagtgatcctcccaagctt-------------tttgtattttttccactgcggtgttgttggaggtattgggcatccagg 32685844  T
Q  218 tctcaaaaacacgtgcacaaagtggtttagacacataattcgtgcggatggaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgaca 317  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  32685843 tctcaaaaacacatgcacaaagtggtttagacacataattcgtgcggatggaggaaaacatgtttcagaaaagttatttccatgtttcagcacaacgaca 32685744  T
Q  318 accttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaaccatttttcttccggcgcaattga 391  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  32685743 accttactgtataatgttgcaatgacgtgtcccatatctggtgccgtcaaccatttttcttccggcgcaattga 32685670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 19809972 - 19809814
Alignment:
Q  56 atcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaaataaacactgcctcgcaacaaagtgatcctcccaagct 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19809972 atcatttttatttgtttatttgggtggttggtcgcctttttcaatatccattaattcattaaacaaacactgcctcgcaacaaagtgatcctcccaagct 19809873  T
Q  156 tgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcatcc 214  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19809872 tgagactctggctttttgtactttttccactgcggtgttgttggaggtattgggcatcc 19809814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 19807631 - 19807508
Alignment:
Q  268 gaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgacaaccttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaa 367  Q
    |||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||    
T  19807631 gaggaaaacatgtttcagaaaagttatttccatatttcagtacaacgacaaccttattatataatgatgcaatgacgtgtcccatatctggtaccgtcaa 19807532  T
Q  368 ccatttttcttccggcgcaattga 391  Q
    ||||||||||||||||||||||||    
T  19807531 ccatttttcttccggcgcaattga 19807508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19810028 - 19809986
Alignment:
Q  18 aataaaagtcaggtagtctcgagcatatcttcctcgtcatcat 60  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  19810028 aataaaagtcaagtagtcttgagcacatcttcctcgtcatcat 19809986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 19807724 - 19807691
Alignment:
Q  211 atccaggtctcaaaaacacgtgcacaaagtggtt 244  Q
    |||| |||||||||||||||||||||||||||||    
T  19807724 atccgggtctcaaaaacacgtgcacaaagtggtt 19807691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 1198396 - 1198208
Alignment:
Q  56 atcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaaataaacactgcctcgcaacaaagtgatcctcccaagct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1198396 atcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaaacaaacactgcctcgcaacaaagtgatcctcccaagct 1198297  T
Q  156 tgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcatccaggtctcaaaaacacgtgcacaaagtggtt 244  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1198296 tgagactctggctttttgtattttttccattgcggtgttgttggaggtattgggcatccgggtctcaaaaacacgtgcacaaagtggtt 1198208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 1198148 - 1198025
Alignment:
Q  268 gaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgacaaccttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaa 367  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||    
T  1198148 gaggaaaacatgtttcagaaaagttatttccatatttcagcacaacgacaaccttattatataatgatgcaatgacgtgtcccatatctggtaccgtcaa 1198049  T
Q  368 ccatttttcttccggcgcaattga 391  Q
    ||||||||||||||||||||||||    
T  1198048 ccatttttcttccggcgcaattga 1198025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1198452 - 1198410
Alignment:
Q  18 aataaaagtcaggtagtctcgagcatatcttcctcgtcatcat 60  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  1198452 aataaaagtcaagtagtcttgagcacatcttcctcgtcatcat 1198410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 25208748 - 25208936
Alignment:
Q  56 atcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaaataaacactgcctcgcaacaaagtgatcctcccaagct 155  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  25208748 atcatttttatttgtttctttgggtggttgctcacctttttcaatatccattaattcattaaataaacactgcctcgcaacaaattgatcctcccaaggt 25208847  T
Q  156 tgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcatccaggtctcaaaaacacgtgcacaaagtggtt 244  Q
    || ||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||| || |||| |||||||||    
T  25208848 tgagactctggccttttgtagtttttccacttcagtgttgttggaggtattgggcatccgggtctcaaaaaaacatgcaaaaagtggtt 25208936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 377
Target Start/End: Original strand, 25208996 - 25209105
Alignment:
Q  268 gaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgacaaccttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaa 367  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||  ||   ||||    
T  25208996 gaggaaaacatgtttcagaaaagttatttccatgtttcagcacaacaactaccttattgtataatgttgcaatgacgtgtcccatatcttgtattctcaa 25209095  T
Q  368 ccatttttct 377  Q
    ||||||||||    
T  25209096 ccatttttct 25209105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 18293680 - 18293492
Alignment:
Q  56 atcatttttatttgtttctttgggtggttggtcgcctttttcaatatccattaattcattaaataaacactgcctcgcaacaaagtgatcctcccaagct 155  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||| ||    
T  18293680 atcatttttatttgtttctttcggtcgttggtcgcctttttcaatattctttaattcattaaacatacactgcctcgcaacaaagtgatcctcccaaact 18293581  T
Q  156 tgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcatccaggtctcaaaaacacgtgcacaaagtggtt 244  Q
    || | ||||||  || ||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  18293580 tgagtctctggtcttctgtaacttttccactgcggtgttgttggaggtattgggcatccaggtctcagaaacacatgaacaaagtggtt 18293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 18293432 - 18293317
Alignment:
Q  268 gaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgacaaccttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaa 367  Q
    |||||||||||||||| |||||    ||||||| |||||  ||||| ||||| ||||  |||||||||||||||| ||||||||||||||  || |||||    
T  18293432 gaggaaaacatgtttctgaaaaaccgtttccatatttcaaaacaactacaactttaccatataatgttgcaatgatgtgtcccatatctggcactgtcaa 18293333  T
Q  368 ccatttttcttccggc 383  Q
    ||||||||||||||||    
T  18293332 ccatttttcttccggc 18293317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 8494749 - 8494626
Alignment:
Q  268 gaggaaaacatgtttcggaaaagtaatttccatgtttcagcacaacgacaaccttactgtataatgttgcaatgacgtgtcccatatctgataccgtcaa 367  Q
    ||||||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||  || ||  |||||    
T  8494749 gaggaaaacatgtttcaaaaaagttatttccatgtttcagcacaatgacaaccttattgtataatgttgcaataatgtgtcccatacatggtattgtcaa 8494650  T
Q  368 ccatttttcttccggcgcaattga 391  Q
    | ||||||||||  ||||||||||    
T  8494649 caatttttcttctcgcgcaattga 8494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 8494938 - 8494807
Alignment:
Q  113 attaaataaacactgcctcgcaacaaagtgatcctcccaagcttgggactctggctttttgtattttttccactgcggtgttgttggaggtattgggcat 212  Q
    |||||| ||||||| |||||||||||||||||| |||||||| || | |||| ||  ||||||| |||||||||||  ||||||||||| ||||||||||    
T  8494938 attaaacaaacactacctcgcaacaaagtgatcttcccaagcatgagtctctcgccatttgtatgttttccactgcaatgttgttggagatattgggcat 8494839  T
Q  213 ccaggtctcaaaaacacgtgcacaaagtggtt 244  Q
     | |||||||||||||  | ||||||||||||    
T  8494838 tcgggtctcaaaaacatatacacaaagtggtt 8494807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University