View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_28 (Length: 396)
Name: NF9623_low_28
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 34 - 377
Target Start/End: Complemental strand, 35985823 - 35985478
Alignment:
| Q |
34 |
tatgtcattaaatgggatctttttt-actgatgttgtaccatcaagcatccatgcgactttcatgccatagaagtacatttaaatgggatcattatatga |
132 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985823 |
tatgtcattaaatgggatctttttttactgatgttgtaccatcaagcatccatgcgactttcatgccatagaagtacatttaaatgggatcattatatga |
35985724 |
T |
|
| Q |
133 |
gcatctttttcttattgaatgacaacaaacacactaatcttttttctgttaagtggaatcggaggttgtaccattagatatccatgcgtctttcatgtca |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |
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| T |
35985723 |
gcatctttttcttattgaatgacaacaaacacactaatattttttcagttaagtggaatcggaggttgtaccattaaatatcgatgcgtctttcatttca |
35985624 |
T |
|
| Q |
233 |
tataagtacatatgatatcaattataatgatttaaaattgacctttcttctccaacctcttcctctctgcctcctttttccaaaccaacagaaatggatc |
332 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |
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| T |
35985623 |
tataagtacatatgatatcaattataaggatttgaaattgacctttcttctccaacctcttcctctccgcctccttttttcaaacccacataaatggatc |
35985524 |
T |
|
| Q |
333 |
aaaatgttttccatttctagtttaaagtagaagg-ttgattaacga |
377 |
Q |
| |
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||| ||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
35985523 |
aaattgttttctatttctagtttaaagtagaaggtttgattaacga |
35985478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 34 - 377
Target Start/End: Complemental strand, 36007231 - 36006886
Alignment:
| Q |
34 |
tatgtcattaaatgggatctttttt-actgatgttgtaccatcaagcatccatgcgactttcatgccatagaagtacatttaaatgggatcattatatga |
132 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36007231 |
tatgtcattaaatgggatctttttttactgatgttgtaccatcaagcatccatgcgactttcatgccatagaagtacatttaaatgggatcattatatga |
36007132 |
T |
|
| Q |
133 |
gcatctttttcttattgaatgacaacaaacacactaatcttttttctgttaagtggaatcggaggttgtaccattagatatccatgcgtctttcatgtca |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |
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|
| T |
36007131 |
gcatctttttcttattgaatgacaacaaacacactaatattttttcagttaagtggaatcggaggttgtaccattaaatatcgatgcgtctttcatttca |
36007032 |
T |
|
| Q |
233 |
tataagtacatatgatatcaattataatgatttaaaattgacctttcttctccaacctcttcctctctgcctcctttttccaaaccaacagaaatggatc |
332 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |
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| T |
36007031 |
tataagtacatatgatatcaattataaggatttgaaattgacctttcttctccaacctcttcctctccgcctccttttttcaaacccacataaatggatc |
36006932 |
T |
|
| Q |
333 |
aaaatgttttccatttctagtttaaagtagaagg-ttgattaacga |
377 |
Q |
| |
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||| ||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
36006931 |
aaattgttttctatttctagtttaaagtagaaggtttgattaacga |
36006886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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