View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9623_low_30 (Length: 395)
Name: NF9623_low_30
Description: NF9623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9623_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 1139229 - 1139604
Alignment:
| Q |
5 |
tatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaatgg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1139229 |
tatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttcaaatgg |
1139328 |
T |
|
| Q |
105 |
attggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactcca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139329 |
attggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactcca |
1139428 |
T |
|
| Q |
205 |
tttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139429 |
tttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgt |
1139528 |
T |
|
| Q |
305 |
attcgatctacgttcatcctagtccttccttcaatgaaacagtttattatcatagctcagtgttttatggccgaag |
380 |
Q |
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| T |
1139529 |
attcgatctacgttcatcctagtccttccttcaatgaaacagtttataatcaaagctcagtgttttatggccgaag |
1139604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 2 - 380
Target Start/End: Original strand, 1136018 - 1136393
Alignment:
| Q |
2 |
tattatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaa |
101 |
Q |
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| T |
1136018 |
tattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatcaaacaaaattgtccggcta---ctcataaccttacttcaaa |
1136114 |
T |
|
| Q |
102 |
tggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaact |
201 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136115 |
tggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggctcctatgattcataaaact |
1136214 |
T |
|
| Q |
202 |
ccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
1136215 |
ccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggt |
1136314 |
T |
|
| Q |
302 |
tgtattcgatctacgttcatcctagtccttccttcaatgaaacagtttattatcatagctcagtgttttatggccgaag |
380 |
Q |
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| T |
1136315 |
tgtattcgatctacgttcatcctagcccttccttcaatgaaaccgtttataatcaaagcttagtgtttcatggccgaag |
1136393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 38 - 369
Target Start/End: Complemental strand, 54479475 - 54479144
Alignment:
| Q |
38 |
ataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctat |
137 |
Q |
| |
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|||||||||| ||||||||||||||| || |||| | || | ||||| |||||||||||| | |||| ||| |||| || || |||||||||| |||||| |
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| T |
54479475 |
ataaccaaacaaatatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctat |
54479376 |
T |
|
| Q |
138 |
gcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttc |
237 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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| T |
54479375 |
gcatgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggttgcgtttatgttc |
54479276 |
T |
|
| Q |
238 |
ttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgtattcgatctacgttcatcctagtccttccttca |
337 |
Q |
| |
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||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| |||||| | ||||||| |||||| |||| |
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| T |
54479275 |
ttgacaataggtcctgttttgttggctccactttgggagaaattcttcaaaggaaatgaagggttatattctatctacatacatcctaatccttctttca |
54479176 |
T |
|
| Q |
338 |
atgaaacagtttattatcatagctcagtgttt |
369 |
Q |
| |
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|||||| |||||| ||| |||||||||||| |
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| T |
54479175 |
atgaaatggtttatactcaaagctcagtgttt |
54479144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 92 - 380
Target Start/End: Complemental strand, 31269290 - 31269002
Alignment:
| Q |
92 |
ttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgat |
191 |
Q |
| |
|
|||||| |||||| ||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| || ||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
|
| Q |
192 |
tcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaagga |
291 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||| ||||| ||||| ||||| | | |||| |||||||| | |||||||||||||| |||||| |
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| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaagga |
31269091 |
T |
|
| Q |
292 |
aacgaagggttgtattcgatctacgttcatcctagtccttccttcaatgaaacagtttattatcatagctcagtgttttatggccgaag |
380 |
Q |
| |
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|| |||||||||||||| |||||| ||||||| | |||||| ||||||||||| |||||| |||| |||||||| ||| |||||||||| |
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| T |
31269090 |
aatgaagggttgtattctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaagctcagtctttcatggccgaag |
31269002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 380
Target Start/End: Complemental strand, 48324581 - 48324340
Alignment:
| Q |
139 |
catgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
238 |
Q |
| |
|
||||| ||||| || |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| | |
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| T |
48324581 |
catgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttt |
48324482 |
T |
|
| Q |
239 |
tgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgtattcgatctacgttcatcctagtccttccttcaa |
338 |
Q |
| |
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||||||||||||| | ||||| ||||| |||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||| ||||| || ||||| |
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| T |
48324481 |
tgacaaaaggtcccgtcttgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaa |
48324382 |
T |
|
| Q |
339 |
tgaaacagtttattatcatagctcagtgttttatggccgaag |
380 |
Q |
| |
|
| |||| ||||| || | || || |||||| |||||||||| |
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|
| T |
48324381 |
tcaaacggtttacaatgaaagatctgtgtttcatggccgaag |
48324340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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